when I install package "affyPLM" on Linux ,there are some errors I can't deal with, please help me -- output of sessionInfo(): [kaishi at csr60 ~]$ R --vanilla R version 3.0.1 (2013-05-16) -- "Good Sport" Copyright (C) 2013 The R Foundation for Statistical Computing Platform: x86_64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > source("http://bioconductor.org/biocLite.R") Bioconductor version 2.12 (BiocInstaller 1.10.2), ?biocLite for help > biocLite("affyPLM") \BioC_mirror: http://bioconductor.org Using Bioconductor version 2.12 (BiocInstaller 1.10.2), R version 3.0.1. Installing package(s) 'affyPLM' trying URL 'http://bioconductor.org/packages/2.12/bioc/src/contrib/aff yPLM_1.36.0.tar.gz' Content type 'application/x-gzip' length 6135144 bytes (5.9 Mb) opened URL ================================================== downloaded 5.9 Mb * installing *source* package ??affyPLM?? ... ** libs gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c LESN.c -o LESN.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_avg_log.c -o PLM_avg_log.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_biweight.c -o PLM_biweight.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_log_avg.c -o PLM_log_avg.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_medianPM.c -o PLM_medianPM.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_median_logPM.c -o PLM_median_logPM.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_medianpolish.c -o PLM_medianpolish.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c PLM_modelmatrix.c -o PLM_modelmatrix.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c SCAB.c -o SCAB.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c chipbackground.c -o chipbackground.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c common_types.c -o common_types.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c do_PLMrlm.c -o do_PLMrlm.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c do_PLMrma.c -o do_PLMrma.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c do_PLMthreestep.c -o do_PLMthreestep.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c idealmismatch.c -o idealmismatch.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c lm_threestep.c -o lm_threestep.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c matrix_functions.c -o matrix_functions.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c nthLargestPM.c -o nthLargestPM.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c preprocess.c -o preprocess.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c psi_fns.c -o psi_fns.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c qnorm_probeset.c -o qnorm_probeset.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c read_rmaexpress.c -o read_rmaexpress.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c rlm_PLM.c -o rlm_PLM.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c rlm_threestep.c -o rlm_threestep.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c rma_PLM.c -o rma_PLM.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c rma_common.c -o rma_common.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c scaling.c -o scaling.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c threestep.c -o threestep.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c threestep_PLM.c -o threestep_PLM.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c threestep_common.c -o threestep_common.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c threestep_summary.c -o threestep_summary.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c threestep_summary_methods.c -o threestep_summary_methods.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" -fpic -g -O2 -c transfns.c -o transfns.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o affyPLM.so LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o -lgfortran -lm -L/usr/local/lib64/R/lib -lRlapack -L/usr/local/lib64/R/lib -lRblas -lz installing to /home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/affyPLM/libs ** R Warning in dir.create(outCodeDir) : cannot create dir '/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/affyPLM/R', reason 'Disk quota exceeded' Error in .install_package_code_files(".", instdir) : cannot open directory '/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/affyPLM/R' ERROR: unable to collate and parse R files for package ??affyPLM?? * removing ??/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/affyPLM?? The downloaded source packages are in ??/tmp/RtmpgTxnpB/downloaded_packages?? Warning messages: 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : installation of package ??affyPLM?? had non-zero exit status 2: installed directory not writable, cannot update packages 'class', 'foreign', 'MASS', 'mgcv', 'nlme', 'nnet', 'spatial' -- Sent via the guest posting facility at bioconductor.org.

looks like you need some more disk space Warning in dir.create(outCodeDir) : cannot create dir '/home/comp/kaishi/R/x86_64- unknown-linux-gnu-library/3.0/affyPLM/R', reason 'Disk quota exceeded' On Thu, Jul 11, 2013 at 5:05 AM, sk [guest] <guest@bioconductor.org> wrote: > > when I install package "affyPLM" on Linux ,there are some errors I can't > deal with, please help me > > > > -- output of sessionInfo(): > > [kaishi@csr60 ~]$ R --vanilla > > R version 3.0.1 (2013-05-16) -- "Good Sport" > Copyright (C) 2013 The R Foundation for Statistical Computing > Platform: x86_64-unknown-linux-gnu (64-bit) > > R is free software and comes with ABSOLUTELY NO WARRANTY. > You are welcome to redistribute it under certain conditions. > Type 'license()' or 'licence()' for distribution details. > > Natural language support but running in an English locale > > R is a collaborative project with many contributors. > Type 'contributors()' for more information and > 'citation()' on how to cite R or R packages in publications. > > Type 'demo()' for some demos, 'help()' for on-line help, or > 'help.start()' for an HTML browser interface to help. > Type 'q()' to quit R. > > > source("http://bioconductor.org/biocLite.R") > Bioconductor version 2.12 (BiocInstaller 1.10.2), ?biocLite for help > > > biocLite("affyPLM") > \BioC_mirror: http://bioconductor.org > Using Bioconductor version 2.12 (BiocInstaller 1.10.2), R version 3.0.1. > Installing package(s) 'affyPLM' > trying URL ' > http://bioconductor.org/packages/2.12/bioc/src/contrib/affyPLM_1.36. 0.tar.gz > ' > Content type 'application/x-gzip' length 6135144 bytes (5.9 Mb) > opened URL > ================================================== > downloaded 5.9 Mb > > * installing *source* package âaffyPLMâ ... > ** libs > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c LESN.c -o LESN.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_avg_log.c -o PLM_avg_log.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_biweight.c -o PLM_biweight.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_log_avg.c -o PLM_log_avg.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_medianPM.c -o PLM_medianPM.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_median_logPM.c -o PLM_median_logPM.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_medianpolish.c -o PLM_medianpolish.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c PLM_modelmatrix.c -o PLM_modelmatrix.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c SCAB.c -o SCAB.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c chipbackground.c -o chipbackground.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c common_types.c -o common_types.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c do_PLMrlm.c -o do_PLMrlm.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c do_PLMrma.c -o do_PLMrma.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c do_PLMthreestep.c -o do_PLMthreestep.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c idealmismatch.c -o idealmismatch.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c lm_threestep.c -o lm_threestep.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c matrix_functions.c -o matrix_functions.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c nthLargestPM.c -o nthLargestPM.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c preprocess.c -o preprocess.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c psi_fns.c -o psi_fns.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c qnorm_probeset.c -o qnorm_probeset.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c read_rmaexpress.c -o read_rmaexpress.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c rlm_PLM.c -o rlm_PLM.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c rlm_threestep.c -o rlm_threestep.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c rma_PLM.c -o rma_PLM.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c rma_common.c -o rma_common.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c scaling.c -o scaling.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c threestep.c -o threestep.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c threestep_PLM.c -o threestep_PLM.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c threestep_common.c -o threestep_common.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c threestep_summary.c -o threestep_summary.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c threestep_summary_methods.c -o > threestep_summary_methods.o > gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -I"/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/preprocessCore/include" > -fpic -g -O2 -c transfns.c -o transfns.o > gcc -std=gnu99 -shared -L/usr/local/lib64 -o affyPLM.so LESN.o > PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o > PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o SCAB.o > chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o > idealmismatch.o lm_threestep.o matrix_functions.o nthLargestPM.o > preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o > rlm_threestep.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o > threestep.o threestep_PLM.o threestep_common.o threestep_summary.o > threestep_summary_methods.o transfns.o -lgfortran -lm > -L/usr/local/lib64/R/lib -lRlapack -L/usr/local/lib64/R/lib -lRblas -lz > installing to > /home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/affyPLM/libs > ** R > Warning in dir.create(outCodeDir) : > cannot create dir > '/home/comp/kaishi/R/x86_64-unknown-linux-gnu- library/3.0/affyPLM/R', > reason 'Disk quota exceeded' > Error in .install_package_code_files(".", instdir) : > cannot open directory > '/home/comp/kaishi/R/x86_64-unknown-linux-gnu-library/3.0/affyPLM/R' > ERROR: unable to collate and parse R files for package âaffyPLMâ > * removing > â/home/comp/kaishi/R/x86_64-unknown-linux-gnu-library/3.0/affyPLMâ > > The downloaded source packages are in > â/tmp/RtmpgTxnpB/downloaded_packagesâ > Warning messages: > 1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) : > installation of package âaffyPLMâ had non-zero exit status > 2: installed directory not writable, cannot update packages 'class', > 'foreign', > 'MASS', 'mgcv', 'nlme', 'nnet', 'spatial' > > > -- > Sent via the guest posting facility at bioconductor.org. > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > 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