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Mario Caceres
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10
@mario-caceres-850
Last seen 10.1 years ago
Hello all,
I am trying to reanalyze some published Affymetrix human and
chimpanzee data eliminating the probes that include sequence
differences between the two species. I think I have finally figured
out that I need to create an alternative CDF file and CDF enviroment
for the unconventional chip with the new definitions of the probes
sets. However, I am not sure of which is the best way to proceed or if
there is already some tool in the Bioconductor package that will allow
me to do that easily. I basically have a list of 50,000 probes that I
would like to remove from the analysis.
Any help would be greatly appreciated!
Thanks,
Mario