Hi all, On Wed, May 29, 2013 at 7:25 AM, Michael Lawrence <lawrence.michael at="" gene.com=""> wrote: > This is probably an incompatibility between the version of libsbml used by > the build machines for compiling the package and the version installed on > your system. Maybe Dan can figure out the version on the build machines? > OK. Hannes, it would help to know the output of sessionInfo() on your machine. Both our release and devel build machines use libsbml 3.4.1. Dan > Michael > > > > > On Wed, May 29, 2013 at 6:32 AM, Hannes Hettling [guest] < > guest at bioconductor.org> wrote: > >> >> Dear all, >> >> we have a problem with installing rsbml on MacOS using libsbml 3.4.1. >> >> The error message (pasted below) is similar to the one in an older post: >> >> http://article.gmane.org/gmane.science.biology.informatics.conducto r/33187/match=rsbml >> >> Error : .onLoad failed in loadNamespace() for 'rsbml', details: >> call: dyn.load(file, DLLpath = DLLpath, ...) >> error: unable to load shared object >> '/Library/Frameworks/R.framework/Versions/2.15/Resources/library/rs bml/libs/x86_64/rsbml.so': >> >> dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/libr ary/rsbml/libs/x86_64/rsbml.so, >> 6): Symbol not found: _ASTNode_addChild >> Referenced from: >> /Library/Frameworks/R.framework/Versions/2.15/Resources/library/rsb ml/libs/x86_64/rsbml.so >> Expected in: dynamic lookup >> >> We set the environment variables LIBSBML3_CFLAGS=/usr/local/lib/ and >> LIBSBML3_LIBS=/usr/local/include/ and the directories contain the library >> files and the headers, respectively. >> >> Unfortunately, we are not able to build the package from source, since we >> cannot get access to Xcode (development tools) on that machine. >> >> With which sbml version was the current macos rsbml package compiled? >> >> Hope someone can help us, >> many thanks in advance, >> >> Farah and Hannes >> >> -- output of sessionInfo(): >> >> R version 2.15.1 (2012-06-22) >> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >> >> locale: >> [1] C/UTF-8/C/C/C/C >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >> >> other attached packages: >> [1] BiocGenerics_0.4.0 BiocInstaller_1.8.3 >> >> loaded via a namespace (and not attached): >> [1] graph_1.36.2 stats4_2.15.1 tools_2.15.1 >> >> -- >> Sent via the guest posting facility at bioconductor.org. >> > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor