Is there an R module that does NTP? Hoshida 2010 refers to R code that is part of GenePattern, but I'd rather not deal with the admin headaches of setting up a GenePattern server, and I prefer that all my analyses are self-contained anyway. Are there any packages that do this yet? Should I just download GenePattern, find the R code in question, and adapt it to my needs? Thanks -Ed

the latter, although it seems that something like a Lassoed multinomial logistic regression would do as well... the CMA package implements all sorts of classification schemes for microarray data, but I don't think NTP is one. On Mon, May 13, 2013 at 2:48 PM, Siefker, Ed B. <edwardsiefker@creighton.edu> wrote: > Is there an R module that does NTP? Hoshida 2010 > refers to R code that is part of GenePattern, but I'd rather > not deal with the admin headaches of setting up a > GenePattern server, and I prefer that all my analyses are > self-contained anyway. > > Are there any packages that do this yet? Should I just > download GenePattern, find the R code in question, > and adapt it to my needs? Thanks > -Ed > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- *A model is a lie that helps you see the truth.* * * Howard Skipper<http: cancerres.aacrjournals.org="" content="" 31="" 9="" 1173.full.pdf=""> [[alternative HTML version deleted]]