Hi, I'm having some troubles with the IdeogramTrack. When I made the IdeogramTrack it works, but when I tray to plot it using plotTracks it says that I cannot plot it. But I made this plot this week -worked-, and suddenly in the day after it doenst worked anymore. And still doens't. Can someone help me? Did anyone here had this problem before? Thanks in advance, Deisy > plotTracks(IdeogramTrack(genome="hg19", chromossome = 2)) Erro em seqnames(seqinfo) : erro na avaliação do argumento 'x' na seleção do método para a função 'seqnames': 'Erro em validObject(.Object) : invalid class “Seqinfo” object: 'seqnames(x)' cannot contain zero- length or duplicated names ' > sessionInfo() R version 2.15.1 (2012-06-22) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=pt_BR.UTF-8 LC_NUMERIC=C LC_TIME=pt_BR.UTF-8 LC_COLLATE=pt_BR.UTF-8 [5] LC_MONETARY=pt_BR.UTF-8 LC_MESSAGES=pt_BR.UTF-8 LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=pt_BR.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] splines grid stats graphics grDevices utils datasets methods base other attached packages: [1] org.Hs.eg.db_2.8.0 RSQLite_0.11.2 DBI_0.2-5 [4] rtracklayer_1.18.2 TxDb.Hsapiens.UCSC.hg19.knownGene_2.8.0 GenomicFeatures_1.10.2 [7] AnnotationDbi_1.20.7 Biobase_2.18.0 gwascat_1.2.1 [10] graph_1.36.2 snpStats_1.8.2 Matrix_1.0-12 [13] lattice_0.20-15 survival_2.37-4 GenomicRanges_1.10.7 [16] IRanges_1.16.6 BiocGenerics_0.4.0 Gviz_1.2.1 [19] ggbio_1.6.6 ggplot2_0.9.3.1 loaded via a namespace (and not attached): [1] biomaRt_2.14.0 Biostrings_2.26.3 biovizBase_1.6.2 bitops_1.0-5 BSgenome_1.26.1 [6] cluster_1.14.4 colorspace_1.2-1 dichromat_2.0-0 digest_0.6.3 gridExtra_0.9.1 [11] gtable_0.1.2 Hmisc_3.10-1 labeling_0.1 MASS_7.3-19 munsell_0.4 [16] parallel_2.15.1 plyr_1.8 proto_0.3-10 RColorBrewer_1.0-5 RCurl_1.95-4.1 [21] reshape2_1.2.2 Rsamtools_1.10.2 scales_0.2.3 stats4_2.15.1 stringr_0.6.2 [26] tools_2.15.1 VariantAnnotation_1.4.12 XML_3.96-1.1 zlibbioc_1.4.0 > traceback() Nenhum rastreamento disponível -- Atenciosamente, Deisy Morselli Gysi Bacharel em Biotecnologia Bacharel em Estatística [[alternative HTML version deleted]]

Hi, this has been already fixed in version 1.4.1 (release) and 1.5.1 (devel). Best Robert On 27 Apr 2013, at 15:08, Deisy Gysi <deisygysi at="" gmail.com=""> wrote: > Hi, > > I'm having some troubles with the IdeogramTrack. > > When I made the IdeogramTrack it works, but when I tray to plot it using > plotTracks it says that I cannot plot it. > > But I made this plot this week -worked-, and suddenly in the day after it > doenst worked anymore. And still doens't. > > Can someone help me? Did anyone here had this problem before? > > > Thanks in advance, > Deisy > >> plotTracks(IdeogramTrack(genome="hg19", chromossome = 2)) > Erro em seqnames(seqinfo) : > erro na avalia??o do argumento 'x' na sele??o do m?todo para a fun??o > 'seqnames': 'Erro em validObject(.Object) : > invalid class ?Seqinfo? object: 'seqnames(x)' cannot contain zero- length > or duplicated names > ' > > >> sessionInfo() > R version 2.15.1 (2012-06-22) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=pt_BR.UTF-8 LC_NUMERIC=C > LC_TIME=pt_BR.UTF-8 LC_COLLATE=pt_BR.UTF-8 > [5] LC_MONETARY=pt_BR.UTF-8 LC_MESSAGES=pt_BR.UTF-8 > LC_PAPER=C LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > LC_MEASUREMENT=pt_BR.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] splines grid stats graphics grDevices utils datasets > methods base > > other attached packages: > [1] org.Hs.eg.db_2.8.0 > RSQLite_0.11.2 > DBI_0.2-5 > [4] rtracklayer_1.18.2 > TxDb.Hsapiens.UCSC.hg19.knownGene_2.8.0 > GenomicFeatures_1.10.2 > [7] AnnotationDbi_1.20.7 > Biobase_2.18.0 > gwascat_1.2.1 > [10] graph_1.36.2 > snpStats_1.8.2 > Matrix_1.0-12 > [13] lattice_0.20-15 > survival_2.37-4 > GenomicRanges_1.10.7 > [16] IRanges_1.16.6 > BiocGenerics_0.4.0 > Gviz_1.2.1 > [19] ggbio_1.6.6 > ggplot2_0.9.3.1 > > loaded via a namespace (and not attached): > [1] biomaRt_2.14.0 Biostrings_2.26.3 > biovizBase_1.6.2 bitops_1.0-5 BSgenome_1.26.1 > [6] cluster_1.14.4 colorspace_1.2-1 > dichromat_2.0-0 digest_0.6.3 gridExtra_0.9.1 > [11] gtable_0.1.2 Hmisc_3.10-1 > labeling_0.1 MASS_7.3-19 munsell_0.4 > [16] parallel_2.15.1 plyr_1.8 > proto_0.3-10 RColorBrewer_1.0-5 RCurl_1.95-4.1 > [21] reshape2_1.2.2 Rsamtools_1.10.2 > scales_0.2.3 stats4_2.15.1 stringr_0.6.2 > [26] tools_2.15.1 VariantAnnotation_1.4.12 > XML_3.96-1.1 zlibbioc_1.4.0 > > >> traceback() > Nenhum rastreamento dispon?vel > > > > > -- > Atenciosamente, > Deisy Morselli Gysi > > Bacharel em Biotecnologia > Bacharel em Estat?stica > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor