Tim, Thank you very much for your reply. I have a list of probe list. Do you a example script for me to get the GO terms, instead of GO ID? The Documentation is not very clear for this. http://www.bioconductor.org/packages/2.11/data/annotation/html/Illumin aHumanMethylation450k.db.html On Fri, Mar 29, 2013 at 12:29 PM, Tim Triche, Jr. <tim.triche at="" gmail.com=""> wrote: > Oddly enough, the paper from UCSD with Illumina's folks on it (*) used the > IlluminaHumanMethylation450k.db package (which I am currently rebuilding to > have a startup message about toggleProbes()) to annotate both CpG islands > and GO terms. > > (*) > http://idekerlab.ucsd.edu/publications/Documents/Hannum_MolCell_2012 .pdf > > > On Fri, Mar 29, 2013 at 8:49 AM, Fabrice Tourre <fabrice.ciup at="" gmail.com=""> > wrote: >> >> Dear list, >> >> In the annotation file of Infinium HumanMethylation450 BeadChip, >> >> http://support.illumina.com/documents/MyIllumina/b78d361a-def5 -4adb-ab38-e8990625f053/HumanMethylation450_15017482_v.1.2.csv >> >> for each probe set, they do not have annotation for GO terms, pathways. >> >> As they have done in the annotation file: HG- U133_Plus_2.na32.annot.csv. >> >> Is there some bioconductor package to annotated the Infinium >> HumanMethylation450 probes? Given a probe, feed back the GO terms and >> pathways. >> >> Thank you very much in advance. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: >> http://news.gmane.org/gmane.science.biology.informatics.conductor > > > > > -- > A model is a lie that helps you see the truth. > > Howard Skipper