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Vladimir Morozov
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130
@vladimir-morozov-2740
Last seen 10.3 years ago
Hi,
Is it possible to get SRA sample attributes for a given sample or
experiment ID?
Here is the sample
http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?sample=SRS388155.
With SRAdb package:
> dbGetQuery(sra_con,"select * from sample where sample_accession =
'SRS388155' ")
sample_ID sample_alias sample_accession broker_name center_name
taxon_id
1 354784 <na> SRS388155 <na> <na>
NA
scientific_name common_name anonymized_name individual_name
description
1 <na> <na> <na> <na>
<na>
sra_link sample_url_link xref_link sample_entrez_link ddbj_link
ena_link
1 <na> <na> <na> <na> <na>
<na>
sample_attribute submission_accession sradb_updated
1 <na> SRA065858 2013-02-16 20:06:43
getSRA (search_terms
='SOD1_G93A',out_types=c('sample','experiment','run'),
sra_con=sra_con)#
return 0 rows.
Any suggestions?
Thanks
Vlad
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