Entering edit mode
Vincenzo Capece
▴
140
@vincenzo-capece-4556
Last seen 10.1 years ago
Dear all,
I have a couple of questions about the plots outputted by dexseq
package.
1)In the bottom part of the transcript plot there are several
combinations
of exons join: Are they all possible combinations of alternative
splicing?
2)I am interested to annotate most significance exons, querying PFAM
and
SMART databases according with the paper "Detecting differential usage
of
exons from RNA-Seq data", supplementary figure S4. How did you compute
them?
Thanks in advance
--
Regards,
Vincenzo
[[alternative HTML version deleted]]