Expected value of finding a sequence
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Tim Smith ★ 1.1k
@tim-smith-1532
Last seen 10.2 years ago
Hi, I was looking to find a package/function that would calculate the expected value/frequency of finding a subsequence, within a sequence of length L. For example, assuming that all nucleotides are equally probable, how many times would we expect to find the pattern 'ATTG' in a sequence of length = 20. I tried looking in biostrings and IRanges, but didn't find what I was looking for. many thanks! [[alternative HTML version deleted]]
Biostrings IRanges Biostrings IRanges • 736 views
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