regarding saving R graphis images directly to directory
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SAURIN ★ 1.1k
@saurin-799
Last seen 10.2 years ago
Dear Bioconductor, I am student at University of new haven, CT.I am trying to run my R scripts where I don't have X11() authentication to my account. I run those R scripts and when I generate any graphics I get error and it comes out from system. if possible , please let me know how can i run R scripts ...so, that I just SAVE BOX PLOT or HISTOGRAM jpeg or png files to current directory without poping up on screen or without using any devices or make them silent..or something. Thakn you, Saurin Jnai
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Naomi Altman ★ 6.0k
@naomi-altman-380
Last seen 3.6 years ago
United States
Try ?jpeg to see how to use the jpeg device. This allows you to save your graphic as a jpeg file. There are also devices for bmp, postscript, etc. --Naomi At 01:16 PM 6/20/2004 -0700, you wrote: >Dear Bioconductor, > >I am student at University of new haven, CT.I am trying to run my R >scripts where I don't have >X11() authentication to my account. I run those R scripts and when I >generate any graphics I get >error and it comes out from system. > >if possible , please let me know how can i run R scripts ...so, that I >just SAVE BOX PLOT or >HISTOGRAM jpeg or png files to current directory without poping up on >screen or without using any >devices or make them silent..or something. > > >Thakn you, >Saurin Jnai > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Naomi S. Altman 814-865-3791 (voice) Associate Professor Bioinformatics Consulting Center Dept. of Statistics 814-863-7114 (fax) Penn State University 814-865-1348 (Statistics) University Park, PA 16802-2111
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Thank you for your reply, Dr. Altman, ?jpeg gave me more info on subject problem. Thank you, Saurin Jani --- Naomi Altman <naomi@stat.psu.edu> wrote: > Try > > ?jpeg > > to see how to use the jpeg device. > > This allows you to save your graphic as a jpeg file. There are also > devices for bmp, postscript, etc. > > --Naomi > > At 01:16 PM 6/20/2004 -0700, you wrote: > >Dear Bioconductor, > > > >I am student at University of new haven, CT.I am trying to run my R > >scripts where I don't have > >X11() authentication to my account. I run those R scripts and when I > >generate any graphics I get > >error and it comes out from system. > > > >if possible , please let me know how can i run R scripts ...so, that I > >just SAVE BOX PLOT or > >HISTOGRAM jpeg or png files to current directory without poping up on > >screen or without using any > >devices or make them silent..or something. > > > > > >Thakn you, > >Saurin Jnai > > > >_______________________________________________ > >Bioconductor mailing list > >Bioconductor@stat.math.ethz.ch > >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > Naomi S. Altman 814-865-3791 (voice) > Associate Professor > Bioinformatics Consulting Center > Dept. of Statistics 814-863-7114 (fax) > Penn State University 814-865-1348 (Statistics) > University Park, PA 16802-2111 > >
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Claire Wilson ▴ 280
@claire-wilson-273
Last seen 10.2 years ago
The simpleaffy package has a function screenpng that will allow you to save any images as .png files hope this helps claire > -----Original Message----- > From: bioconductor-bounces@stat.math.ethz.ch > [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of SAURIN > Sent: 20 June 2004 21:17 > To: bioconductor@stat.math.ethz.ch > Subject: [BioC] regarding saving R graphis images directly to > directory > > > Dear Bioconductor, > > I am student at University of new haven, CT.I am trying to > run my R scripts where I don't have > X11() authentication to my account. I run those R scripts and > when I generate any graphics I get > error and it comes out from system. > > if possible , please let me know how can i run R scripts > ...so, that I just SAVE BOX PLOT or > HISTOGRAM jpeg or png files to current directory without > poping up on screen or without using any > devices or make them silent..or something. > > > Thakn you, > Saurin Jnai > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > -------------------------------------------------------- This email is confidential and intended solely for the use o...{{dropped}}
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Thank you for your rpely, Dr. Wilson, I corrected my jpeg problem with png and tried pdfs but here, several R script writers so, if someone wants to use jpeg they should not be hasitate to write that..! I guess, i am loging in from remotely to another machine and thats how i m not getting X server authentication..! did you ever have that problem before ? Thank you, Saurin --- Claire Wilson <clairewilson@picr.man.ac.uk> wrote: > The simpleaffy package has a function screenpng that will allow you to > save any images as .png files > > hope this helps > > claire > > > -----Original Message----- > > From: bioconductor-bounces@stat.math.ethz.ch > > [mailto:bioconductor-bounces@stat.math.ethz.ch] On Behalf Of SAURIN > > Sent: 20 June 2004 21:17 > > To: bioconductor@stat.math.ethz.ch > > Subject: [BioC] regarding saving R graphis images directly to > > directory > > > > > > Dear Bioconductor, > > > > I am student at University of new haven, CT.I am trying to > > run my R scripts where I don't have > > X11() authentication to my account. I run those R scripts and > > when I generate any graphics I get > > error and it comes out from system. > > > > if possible , please let me know how can i run R scripts > > ...so, that I just SAVE BOX PLOT or > > HISTOGRAM jpeg or png files to current directory without > > poping up on screen or without using any > > devices or make them silent..or something. > > > > > > Thakn you, > > Saurin Jnai > > > > _______________________________________________ > > Bioconductor mailing list > > Bioconductor@stat.math.ethz.ch > > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor > > > > -------------------------------------------------------- > > > This email is confidential and intended solely for the use of the person(s) ('the intended > recipient') to whom it was addressed. Any views or opinions presented are solely those of the > author and do not necessarily represent those of the Paterson Institute for Cancer Research or > the Christie Hospital NHS Trust. It may contain information that is privileged & confidential > within the meaning of applicable law. Accordingly any dissemination, distribution, copying, or > other use of this message, or any of its contents, by any person other than the intended > recipient may constitute a breach of civil or criminal law and is strictly prohibited. If you > are NOT the intended recipient please contact the sender and dispose of this e-mail as soon as > possible. > >
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@kasper-daniel-hansen-459
Last seen 10.2 years ago
On Tue, Jun 22, 2004 at 07:19:55AM -0700, SAURIN wrote: > here, I have solved my problem with post script option, but we have more than one R scrpt writers > who writes on one centralized server and execute so, its like limiting jpeg option to everyone. is > there anything else can be done for X11 authentication problem over remote access of machine and > executing R scripts? > > I highly appreciate your help in this, You have different devices available like postscript, jpeg and png. If you are not able to get access to a remote X connection, you will not be able to use the X11 device. If you just have problems, I suggest approaching your local sysadmin with the problem. Just tell him/her that you want access to X - this has basically nothing to do with bioconductor. Provided you are using *NIX at both ends, and using ssh to login, you can just do a # ssh -X username@server This requires that the X server on the server allows X forwarding. I cannot really help without knowing more details about the server OS and the method you are using to get access to the server. /Kasper > > --- Kasper Daniel Hansen <k.hansen@biostat.ku.dk> wrote: > > On Sun, Jun 20, 2004 at 01:16:30PM -0700, SAURIN wrote: > > > Dear Bioconductor, > > > > > > I am student at University of new haven, CT.I am trying to run my R scripts where I don't have > > > X11() authentication to my account. I run those R scripts and when I generate any graphics I > > get > > > error and it comes out from system. > > > > > > if possible , please let me know how can i run R scripts ...so, that I just SAVE BOX PLOT or > > > HISTOGRAM jpeg or png files to current directory without poping up on screen or without using > > any > > > devices or make them silent..or something. > > > > I just replied to this questions. I am in the process of switching email > > agents and I think I forgot to put a cc to the bioconductor list. Colud > > you please forward my answer to the mailing list? > > -- > > Kasper Daniel Hansen, Research Assistant > > Department of Biostatistics, University of Copenhagen > > > > > > > > > __________________________________ > Do you Yahoo!? > Yahoo! Mail - 50x more storage than other providers! > http://promotions.yahoo.com/new_mail -- Kasper Daniel Hansen, Research Assistant Department of Biostatistics, University of Copenhagen
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