Hello list, Using limmaGUI-1.1.0 I found an error trying to calculate duplicate correlations. limmaGUI uses dupcor.series and the error says that it is deprecated. Changing the call from dupcor.series to duplicateCorrelation in main.R seems to solve the problem. This is the main.R diff output for limmaGUI-1.1.0 : 3751c3751 < Try(dupcor <- duplicateCorrelation(MA$M,as.matrix(design),ndups=ndups,sp acing=spacing)) --- > Try(dupcor <- dupcor.series(MA$M,as.matrix(design),ndups=ndups,spacing=s pacing)) Thanks. D.

Hi Diego, On Mon, 21 Jun 2004, Diego D?ez Ruiz wrote: > Using limmaGUI-1.1.0 I found an error trying to calculate duplicate > correlations. limmaGUI uses dupcor.series and the error says that it is > deprecated. Changing the call from dupcor.series to duplicateCorrelation Thanks for the report. I've fixed this and uploaded limmaGUI 1.1.1 (including the fix) to : http://bioinf.wehi.edu.au/limmaGUI/ It will take a few days to appear on BioC-devel. Don't forget to press Reload/Refresh to make sure you have the latest version of http://bioinf.wehi.edu.au/limmaGUI/ You should be able to install automatically with: install.packages("limmaGUI",contriburl="http://bioinf.wehi.edu.au/limm aGUI") provided that .libPaths() is set to a suitable directory. Regards, James