Hi, Hopefully within a few days, you will see limmaGUI 1.1.0 and affylmGUI 1.1.0 on BioC devel. For now, they are at: http://bioinf.wehi.edu.au/limmaGUI/ http://bioinf.wehi.edu.au/affylmGUI/ They can be installed with: install.packages("limmaGUI",contriburl="http://bioinf.wehi.edu.au/limm aGUI") and install.packages("affylmGUI",contriburl="http://bioinf.wehi.edu.au/aff ylmGUI") New Features/Fixes in both GUIs -------------------------------- - Recent files now displayed in File menu (only works if you install the limmaGUI/affylmGUI package somwhere where you have write-permission, as the recent files are stored in limmaGUI/etc or affylmGUI/etc.) - Directory separators are now displayed as back-slashes for Windows users, but they are still stored internally as forward-slashes. - Plot titles are now done with title() instead of main= to avoid warnings (from using non-standard plotting techniques like tkrplot and HTMLplot.) - Inconsistent font fixed in entry-box in choose-directory dialog. New Features in limmaGUI ------------------------ - Robust linear model fits now available as an alternative to the usual least-squares linear model fit. - An "Other" button has been added to the Image-Analysis-File-Format dialog to allow a user to manually enter column-headings for Red/Green Foreground and Background intensities for unsupported Image-Analysis file formats. New Features in affylmGUI ------------------------- - A new worked example with screenshots: A Malaria Life-Cycle Study from Elizabeth Winzeler's lab at The Scripps Institute - Fixed a bug in the "Cancel" button of the choose-directory dialog. More New Features Coming Soon ----------------------------- - Novice/Advanced modes for the GUIs, so that in Novice mode, many of the recommended default options will be chosen automatically, rather than asking the user every possible question regarding background-correction method, normalization method, etc. - Option to choose between tkrplot and the regular R graphics device for all plots. - Updated R-for-windows installation wizards for limmaGUI and affylmGUI - Any necessary bug fixes Regards, James ---------------------------------------------------------------------- ---- James Wettenhall Tel: (+61 3) 9345 2629 Division of Genetics and Bioinformatics Fax: (+61 3) 9347 0852 The Walter & Eliza Hall Institute E-mail: wettenhall@wehi.edu.au of Medical Research, Mobile: (+61 / 0 ) 438 527 921 1G Royal Parade, Parkville, Vic 3050, Australia http://www.wehi.edu.au