hi gurus i work with a matrix of data and there are no NAs or Infinite or missing values i tried to work with this package but i get all sorts of errors: 1) the initializeHP() function, called as HP <- initializeHP(D, cond) when a value in the matrix created with the makeMyD() function is == 1.000000 or -1.00000, the initializeHP() function will somehow create NAs and quit giving me the following error Error in mvnX(data = data, prior = prior): NA/NaN/Inf in foreign function call (arg 1) the condition variable was created as cond <- c(rep(1, 3), rep(2, 3)) and the input matrix for the initializeHP function was created as D <- makeMyD(myData, cond) 2) the HP variable (matrix) contains no NAs/Inf but when i call the ebCoexpressOneStep(D, cond, pat, HP) function it gives me an error: Error in if (mix[1] < 0.8) { : missing value where TRUE/FALSE needed and i find out that the function creates a matrix of ONLY NaN.. pat was created with: pat <- ebPatterns(c("1,1","1,2")) as requested by the documentation so....any help on how to solve these issues? did anyone use this package successfully in the past? thanks Seb R version 2.15.1 (2012-06-22) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] EBcoexpress_1.2.0 minqa_1.2.1 Rcpp_0.10.1 mclust_4.0 [5] EBarrays_2.22.0 lattice_0.20-10 Biobase_2.18.0 BiocGenerics_0.4.0 loaded via a namespace (and not attached): [1] cluster_1.14.3 grid_2.15.1 tools_2.15.1