kindly  Ignore this message ----- Forwarded Message ----- From: carol white <wht_crl@yahoo.com> To: "bioconductor@stat.math.ethz.ch" <bioconductor@stat.math.ethz.ch> Sent: Sunday, November 18, 2012 8:28 PM Subject: download GSE data with GEOquery Hi, I have downloaded GSE data with GEOquery and dowloaded both geno and phenotype data. But I got another experience with GSE34542. When I used the default parameters (getGEO("GSE34542"), only the genotype matrix was dowloaded. As I am also interested in the phenotype data, I just wonder if I should set GSEMatrix=F. I want to download both data types. Look forward to your advice, Carol [[alternative HTML version deleted]]