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J.T. Poirier
▴
10
@jt-poirier-5569
Last seen 10.1 years ago
I recently updated my R packages and some code that I used to run with
rtracklayer started failing. In particular, laying a new track was
failing silently. I found that the same bug is reproducible in the
vignette, but eval=FALSE for the code chunk in question and thus the
vignette compiles to PDF as normal. Can anyone else reproduce this
bug? Code and session info below.
# This code chunk fails without an error.
###################################################
### code chunk number 15: layTrack (eval = FALSE)
###################################################
## track(session, "targets") <- targetTrack
# We know the code is failing due to the below code and output
table(trackNames(session)=="targets")
FALSE
223
R version 2.15.1 (2012-06-22)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
locale:
[1] C/en_US.US-ASCII/en_US.US-ASCII/C/en_US.US-ASCII/en_US.US-ASCII
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] BSgenome.Hsapiens.UCSC.hg19_1.3.19
[2] BSgenome_1.26.0
[3] Biostrings_2.26.0
[4] rtracklayer_1.18.0
[5] GenomicRanges_1.10.0
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