Question

makeProbePackage deprecated in AnnotationDbi ?

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Hugh Shanahan ▴ 50

@hugh-shanahan-5565

Last seen 10.5 years ago

Hi, I've noticed that AnnotationDbi (v 1.2) no longer has makeProbePackage . Has this been replaced by a different function or has it been hived off to a different package ? Many thanks Hugh -- ---------------------------------------------------------------------- -- Hugh Shanahan Department of Computer Science Lecturer in Bioinformatics Room 246 McCrea Building E-mail : Hugh.Shanahan at rhul.ac.uk Royal Holloway, Web : http://www.shanahanlab.org University of London Tel : +44 (0)1784 443433 Egham, Surrey TW20 0EX Fax : +44 (0)1784 439786 England, U.K. PGP Key http://www.cs.rhul.ac.uk/~hugh/PGP/public_key.asc

AnnotationDbi AnnotationDbi • 967 views

ADD COMMENT • link updated 12.4 years ago by Martin Morgan 25k • written 12.4 years ago by Hugh Shanahan ▴ 50

score 0 · Answer 1 · 2012-10-20

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Martin Morgan 25k

@martin-morgan-1513

Last seen 7 weeks ago

United States

On 10/19/2012 03:33 PM, Hugh Shanahan wrote: > Hi, > I've noticed that AnnotationDbi (v 1.2) no longer has > makeProbePackage . Has this been replaced by a different function or has > it been hived off to a different package ? Hi Hugh -- I think it is now in AnnotationForge. Martin > > Many thanks > Hugh > -- Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold Building M1 B861 Phone: (206) 667-2793

ADD COMMENT • link 12.4 years ago Martin Morgan 25k

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Yes Martin is right, All the code that generates stock annotation packages, along with instructions on how to do this sort of thing has been migrated from AnnotationDbi to AnnotationForge. AnnotationDbi is now lighter so that it imposes less weight on users who have no interest in composing their own packages. Marc On 10/20/2012 05:53 PM, Martin Morgan wrote: > On 10/19/2012 03:33 PM, Hugh Shanahan wrote: >> Hi, >> I've noticed that AnnotationDbi (v 1.2) no longer has >> makeProbePackage . Has this been replaced by a different function or has >> it been hived off to a different package ? > > Hi Hugh -- I think it is now in AnnotationForge. > > Martin > >> >> Many thanks >> Hugh >> > >

ADD REPLY • link 12.4 years ago Marc Carlson ★ 7.2k