Hi ! I got the following message while running AnnBPkgBuilder function. Couls somebody tell me what is going on ??? Warning message: cannot open: HTTP status was `404 Not Found' Error in loadFromUrl(srcUrl) : URL http://www.genome.ucsc.edu/goldenPath/hg17/da tabase/refLink.txt.gz is incorrect or the target site is not responding! Error in ABPkgBuilder(baseName = file.path(myDir, "AnnTh"), srcUrls = getSrcUrl( "ALL", : Failed to parse Golden Path data because of: Error in loadFromUrl(srcUrl) : URL http://www.genome.ucsc.edu/goldenPath/hg17/d atabase/refLink.txt.gz is incorrect or the target site is not responding! -- Mayte Suarez Farinas The Rockefeller University 1230 York Avenue, Box 212 New York, NY 10021 phone: 1-212-327-8186 fax: 1-212-327-7422

Golden Path has changed the downloading site from http://www.genome.ucsc.edu/ to http://hgdownload.cse.ucsc.edu/. I checked the new site and found that build hg17 was not there. I will write to Golden Path to see what happened. I can patch AnnBuilder to use hg16 instead the latest build but am afriad that it may not help as hg16 (currently available) is too old (July 2003). I will let you know what Golden Path says about hg17. >Date: Tue, 1 Jun 2004 10:44:25 -0400 (EDT) >From: Mayte Suarez-Farinas <mayte@babel.rockefeller.edu> >To: bioconductor@stat.math.ethz.ch >MIME-Version: 1.0 >Received-SPF: none (hypatia: domain of bioconductor- bounces@stat.math.ethz.ch does not designate permitted sender hosts) >Received-SPF: none (hypatia: domain of mayte@babel.rockefeller.edu does not designate permitted sender hosts) >X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch >X-Spam-Checker-Version: SpamAssassin 2.63 (2004-01-11) on hypatia.math.ethz.ch >X-Spam-Level: >X-Spam-Status: No, hits=-0.8 required=5.0 tests=AWL autolearn=no version=2.63 >Subject: [BioC] AnnBuilder error .... >X-BeenThere: bioconductor@stat.math.ethz.ch >X-Mailman-Version: 2.1.5 >List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch> >List-Unsubscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe> >List-Archive: <https: www.stat.math.ethz.ch="" pipermail="" bioconductor=""> >List-Post: <mailto:bioconductor@stat.math.ethz.ch> >List-Help: <mailto:bioconductor- request@stat.math.ethz.ch?subject="help"> >List-Subscribe: <https: www.stat.math.ethz.ch="" mailman="" listinfo="" bioconductor="">, <mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe> > > > >Hi ! > >I got the following message while running AnnBPkgBuilder function. >Couls somebody tell me what is going on ??? > > >Warning message: >cannot open: HTTP status was `404 Not Found' >Error in loadFromUrl(srcUrl) : URL >http://www.genome.ucsc.edu/goldenPath/hg17/da >tabase/refLink.txt.gz is incorrect or the target site is not responding! >Error in ABPkgBuilder(baseName = file.path(myDir, "AnnTh"), srcUrls = >getSrcUrl( >"ALL", : > Failed to parse Golden Path data because of: > > Error in loadFromUrl(srcUrl) : URL >http://www.genome.ucsc.edu/goldenPath/hg17/d >atabase/refLink.txt.gz is incorrect or the target site is not responding! > >-- >Mayte Suarez Farinas >The Rockefeller University >1230 York Avenue, Box 212 >New York, NY 10021 >phone: 1-212-327-8186 >fax: 1-212-327-7422 > >_______________________________________________ >Bioconductor mailing list >Bioconductor@stat.math.ethz.ch >https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor Jianhua Zhang Department of Biostatistics Dana-Farber Cancer Institute 44 Binney Street Boston, MA 02115-6084