Dear Wolfgang, Thanks for letting me know! That is great! Best regards, Julie On 8/13/12 7:02 AM, "Wolfgang Huber" <whuber at="" embl.de=""> wrote: > > Dear Julie > > thanks. All my Venn diagram related needs are met by extant packages, so > no need for further engineering from my side. > > Best wishes > Wolfgang > > > Zhu, Lihua (Julie) scripsit 08/10/2012 03:25 PM: >> Wolfgang, >> >> Just to clarify whether you need to make 6-way venn diagram vi >> ChIPpeakAnno:makeVennDiagram or Vennerable (or future gplot) implementation >> suites your needs. Thanks! >> >> Best regards, >> >> Julie >> >> >> ------ Forwarded Message >> From: Heidi Dvinge <heidi at="" ebi.ac.uk=""> >> Date: Thu, 9 Aug 2012 20:04:30 +0100 >> To: Lihua Julie Zhu <julie.zhu at="" umassmed.edu=""> >> Cc: "bioconductor at r-project.org" <bioconductor at="" r-project.org=""> >> Subject: Re: [BioC] ChipPeakAnno: 4-way venn diagram >> >>> Wolfgang, >>> >>> Looks really cool! >>> >>> It seems that drawVennDiagram in gplot only supports venn diagram up to 5 >>> sets. ChIPpeakAnno::makeVennDiagram first finds the overlaps among >>> datasets, >>> then creates venn counts followed by calling the drawVennDiagram in gplot. >>> Should we get the gplot developer to implement the 6-way venn diagram? >> >> This is quite possibly the only example I've ever seen in an article of a >>> 5-way Venn diagram being justified. Not to mention funny :) >> However, if you really want to go down that route, then Vennerable does up >> to 9-way venns (afair). >> >> Best >> \Heidi >> >>> Thanks! >>> >>> Best regards, >>> >>> Julie >>> >>> >>> On 8/9/12 12:11 PM, "Wolfgang Huber" <whuber at="" embl.de=""> wrote: >>> >>>> >>>> Can we have banana-shaped 6-way Venn diagrams? Like here: >>>> http://www.nature.com/nature/journal/v488/n7410/full/nature11241. html#/f4 >>>> >>>> Best wishes >>>> Wolfgang >>>> >>>> Aug/8/12 7:00 PM, Zhu, Lihua (Julie) scripsit:: >>>>> Jose, >>>>> >>>>> The released version ChIPpeakAnno 2.4.0 in Bioconductor 2.10 supports >>>>> 4-way >>>>> venn diagram ( >>>>> http://www.bioconductor.org/packages/release/bioc/html/ChIPpeakA nno.html) >>>>> >>>>> source("http://bioconductor.org/biocLite.R") >>>>> biocLite("ChIPpeakAnno") >>>>> >>>>> Please let me know if this works for you. Thanks! >>>>> >>>>> Best regards, >>>>> >>>>> Julie >>>>> >>>>> On 8/8/12 12:36 PM, "Jos? L?PEZ" <jose.lopez at="" umh.es=""> wrote: >>>>> >>>>>> Dear Julie, >>>>>> >>>>>> Although makeVennDiagram currently (v2.10) supports up to 3-way venn >>>>>> diagram >>>>>> >> (https://stat.ethz.ch/pipermail/bioconductor/attachments/20110502/9 d4a25c5/a >>>>>> tt >>>>>> achment.pl >>>>>> ), I knew that you extended the function to 4-way in the dev version >>>>>> (v2.2.0). >>>>>> I need to make a 4-way venn diagram, so I would like to know whether >>>>>> it might be possible to install the dev version to try it. >>>>>> >>>>>> Thank you in advance for your time and help, >>>>>> Kind regards, >>>>>> >>>>>> Jose >>>>>> >>>>>> >>>>>> [[alternative HTML version deleted]] >>>>>> >>>>>> _______________________________________________ >>>>>> Bioconductor mailing list >>>>>> Bioconductor at r-project.org >>>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>>>> Search the archives: >>>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>>> >>>>> _______________________________________________ >>>>> Bioconductor mailing list >>>>> Bioconductor at r-project.org >>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>>> Search the archives: >>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>>> >>>> >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >> >> >> ------ End of Forwarded Message >> >