rma and gcrma do not work in R 1.9.0
1
0
Entering edit mode
@li-james-prdus-non-jj-765
Last seen 10.2 years ago
I run R 1.9.0 on windows 2000, and have the following libraries installed: affydata_1.3.1 affy_1.4.23 Biobase_1.4.10 DynDoc_1.3.14 gcrma_1.0.6 hgu133acdf_1.4.3 hgu95av2cdf_1.4.3 hgu95av2probe_1.0 matchprobes_1.0.7 moe430acdf_1.4.3 multcomp_0.4-6 mvtnorm_0.6-6 rae230acdf_1.4.3 reposTools_1.3.29 rgu34acdf_1.4.3 tkWidgets_1.5.1 widgetTools_1.2.7 1. The rma function (in affy library) always crashes. 2. When executing the sample code in gcrma function's document, the following error occures: Loading required package: matchprobes Error in f(libname, pkgname) : couldn't find function "addVigs2WinMenu" Does any one known any quick fix or workaround? James [[alternative HTML version deleted]]
affy gcrma affy gcrma • 754 views
ADD COMMENT
0
Entering edit mode
Ben Bolstad ★ 1.1k
@ben-bolstad-93
Last seen 10.2 years ago
Could you please try updating your packages. The current version of the affy package is 1.4.29 and other packages may also be out of date. Thanks, Ben On Fri, 2004-05-14 at 06:57, Li, James [PRDUS Non-J&J] wrote: > I run R 1.9.0 on windows 2000, and have the following libraries installed: > > affydata_1.3.1 > affy_1.4.23 > Biobase_1.4.10 > DynDoc_1.3.14 > gcrma_1.0.6 > hgu133acdf_1.4.3 > hgu95av2cdf_1.4.3 > hgu95av2probe_1.0 > matchprobes_1.0.7 > moe430acdf_1.4.3 > multcomp_0.4-6 > mvtnorm_0.6-6 > rae230acdf_1.4.3 > reposTools_1.3.29 > rgu34acdf_1.4.3 > tkWidgets_1.5.1 > widgetTools_1.2.7 > > 1. The rma function (in affy library) always crashes. > 2. When executing the sample code in gcrma function's document, the > following error occures: > Loading required package: matchprobes > Error in f(libname, pkgname) : couldn't find function > "addVigs2WinMenu" > > Does any one known any quick fix or workaround? > > James > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- Ben Bolstad <bolstad@stat.berkeley.edu> http://www.stat.berkeley.edu/~bolstad
ADD COMMENT

Login before adding your answer.

Traffic: 390 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6