rma and gcrma do not work in R 1.9.0
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@li-james-prdus-non-jj-765
Last seen 10.2 years ago
I run R 1.9.0 on windows 2000, and have the following libraries installed: affydata_1.3.1 affy_1.4.23 Biobase_1.4.10 DynDoc_1.3.14 gcrma_1.0.6 hgu133acdf_1.4.3 hgu95av2cdf_1.4.3 hgu95av2probe_1.0 matchprobes_1.0.7 moe430acdf_1.4.3 multcomp_0.4-6 mvtnorm_0.6-6 rae230acdf_1.4.3 reposTools_1.3.29 rgu34acdf_1.4.3 tkWidgets_1.5.1 widgetTools_1.2.7 1. The rma function (in affy library) always crashes. 2. When executing the sample code in gcrma function's document, the following error occures: Loading required package: matchprobes Error in f(libname, pkgname) : couldn't find function "addVigs2WinMenu" Does any one known any quick fix or workaround? James [[alternative HTML version deleted]]
affy gcrma affy gcrma • 760 views
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Ben Bolstad ★ 1.1k
@ben-bolstad-93
Last seen 10.2 years ago
Could you please try updating your packages. The current version of the affy package is 1.4.29 and other packages may also be out of date. Thanks, Ben On Fri, 2004-05-14 at 06:57, Li, James [PRDUS Non-J&J] wrote: > I run R 1.9.0 on windows 2000, and have the following libraries installed: > > affydata_1.3.1 > affy_1.4.23 > Biobase_1.4.10 > DynDoc_1.3.14 > gcrma_1.0.6 > hgu133acdf_1.4.3 > hgu95av2cdf_1.4.3 > hgu95av2probe_1.0 > matchprobes_1.0.7 > moe430acdf_1.4.3 > multcomp_0.4-6 > mvtnorm_0.6-6 > rae230acdf_1.4.3 > reposTools_1.3.29 > rgu34acdf_1.4.3 > tkWidgets_1.5.1 > widgetTools_1.2.7 > > 1. The rma function (in affy library) always crashes. > 2. When executing the sample code in gcrma function's document, the > following error occures: > Loading required package: matchprobes > Error in f(libname, pkgname) : couldn't find function > "addVigs2WinMenu" > > Does any one known any quick fix or workaround? > > James > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor -- Ben Bolstad <bolstad@stat.berkeley.edu> http://www.stat.berkeley.edu/~bolstad
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