Hi. I haven't been able to install these two packages on my machine using the standard bioclite installer. It keeps telling me that the packages aren't available for my version of R and that certain installed directories are not writable. Here's the session info. --- R version 2.15.1 (2012-06-22) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=C LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.4.7 loaded via a namespace (and not attached): [1] tcltk_2.15.1 tools_2.15.1 --- Here are the tracebacks for the commands --- 2: stop(txt, domain = NA) 1: library("FunciSNP") 2: stop(txt, domain = NA) 1: library("FunciSNP") -- Tim [[alternative HTML version deleted]]

On Thu, Jul 12, 2012 at 3:09 PM, Timothy Duff <timothy.duff at="" ncf.edu=""> wrote: > Hi. I haven't been able to install these two packages on my machine using > the standard bioclite installer. FunciSNP is not available in the release version of Bioconductor, only the devel version: http://bioconductor.org/developers/useDevel/ RSNPper has not been part of Bioconductor since Bioconductor 2.3. Dan > It keeps telling me that the packages > aren't available for my version of R and that certain installed directories > are not writable. > Here's the session info. > > --- > > R version 2.15.1 (2012-06-22) > Platform: x86_64-pc-linux-gnu (64-bit) > > locale: > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 > [7] LC_PAPER=C LC_NAME=C > [9] LC_ADDRESS=C LC_TELEPHONE=C > [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] BiocInstaller_1.4.7 > > loaded via a namespace (and not attached): > [1] tcltk_2.15.1 tools_2.15.1 > > --- > > Here are the tracebacks for the commands > --- > > 2: stop(txt, domain = NA) > 1: library("FunciSNP") > > 2: stop(txt, domain = NA) > 1: library("FunciSNP") > > -- > Tim > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor