Entering edit mode
Ed
▴
230
@ed-4683
Last seen 10.2 years ago
Hi there,
I found the number of pathways in KEGGPATHID2NAME is 390 while that
in KEGGPATHID2EXTID is 3152. Am I missing something? BTW, the pathway
id's
used in this package seems inconsistent too.
Thanks.
Ed
> ?KEGGPATHID2NAME
> xx <- as.list(KEGGPATHID2NAME)
> if(length(xx) > 0){
+ # get the value for the first key
+ xx[[1]]
+ # Get the values for a few keys
+ if(length(xx) >= 3){
+ xx[1:3]
+ }
+ }
$`00010`
[1] "Glycolysis / Gluconeogenesis"
$`00020`
[1] "Citrate cycle (TCA cycle)"
$`00030`
[1] "Pentose phosphate pathway"
> length(xx)
[1] 390
?KEGGPATHID2EXTID
xx <- as.list(KEGGPATHID2EXTID)
if(length(xx) > 0){
# Get the value of the first key
xx[[1]]
# Get the values for multiget for a few keys
if(length(xx) >= 3){
xx[1:3]
}
}
> length(xx)
[1] 3152
> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=Chinese (Simplified)_People's Republic of China.936
[2] LC_CTYPE=Chinese (Simplified)_People's Republic of China.936
[3] LC_MONETARY=Chinese (Simplified)_People's Republic of China.936
[4] LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_People's Republic of China.936
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] KEGG.db_2.6.1 RSQLite_0.11.1 DBI_0.2-5
[4] AnnotationDbi_1.16.18 Biobase_2.14.0
loaded via a namespace (and not attached):
[1] IRanges_1.12.5 tools_2.14.1
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