Entering edit mode
Rudy.vanEijsden@GEN.unimaas.nl
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50
@rudyvaneijsdengenunimaasnl-709
Last seen 10.2 years ago
Dear all,
I get the following error when doing the Mas5 calculation using the
Simpleaffy package:
============================================================
Rgui.exe has generated errors and will be closed by Windows.
You will need to restart the program.
An error log is being created.
============================================================
More details:
R-version: 1090 for Windows.
Simpleaffy version: Version: 1.09, Packaged: Fri Apr 16 03:23:08 2004;
madman
Chips: 4 affymetrix yeast chips (YG-S98)
Code used:
>library(simpleaffy)
>library(ygs98cdf)
>raw.data <- read.affy()
>data.mas <- call.exprs(raw.data, "mas5")
This is the moment when the error pups up.
Using rma in stead of mas5 does not give an error (>data.rma <-
call.exprs(raw.data, "rma")
Do you have any idea how to solve this problem.
I have tried doing the mas5 calculation using the affy package....and
this
works fine. But I would like to use the simpleaffy package.
Greetz,
Rudy.
rudy.vaneijsden@gen.unimaas.nl