Extracting a .CEL file from an AffyBatch Object
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@fong-chun-chan-4166
Last seen 10.2 years ago
Hi, I have a rather strange task that needs to be done due to an unfortunate situation. I have an AffyBatch object and I was wondering if it was possible to extract the raw .CEL files from this AffyBatch file? Any sort of general idea of how to do it would be greatly helpful. Thanks, Fong [[alternative HTML version deleted]]
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@james-w-macdonald-5106
Last seen 3 days ago
United States
Hi Fong, On 6/25/2012 4:30 PM, Fong Chun Chan wrote: > Hi, > > I have a rather strange task that needs to be done due to an unfortunate > situation. I have an AffyBatch object and I was wondering if it was > possible to extract the raw .CEL files from this AffyBatch file? Any sort > of general idea of how to do it would be greatly helpful. I believe you can do this using the affxparser package. I would look at createCel and updateCel in particular. Best, Jim > > Thanks, > > Fong > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099
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Thanks for the suggestion. I was able to successfully do this with the createCel() and updateCel() functions. Fong On Mon, Jun 25, 2012 at 2:33 PM, James W. MacDonald <jmacdon@uw.edu> wrote: > Hi Fong, > > > On 6/25/2012 4:30 PM, Fong Chun Chan wrote: > >> Hi, >> >> I have a rather strange task that needs to be done due to an unfortunate >> situation. I have an AffyBatch object and I was wondering if it was >> possible to extract the raw .CEL files from this AffyBatch file? Any sort >> of general idea of how to do it would be greatly helpful. >> > > I believe you can do this using the affxparser package. I would look at > createCel and updateCel in particular. > > Best, > > Jim > > >> Thanks, >> >> Fong >> >> [[alternative HTML version deleted]] >> >> ______________________________**_________________ >> Bioconductor mailing list >> Bioconductor@r-project.org >> https://stat.ethz.ch/mailman/**listinfo/bioconductor<https: stat.e="" thz.ch="" mailman="" listinfo="" bioconductor=""> >> Search the archives: http://news.gmane.org/gmane.** >> science.biology.informatics.**conductor<http: news.gmane.org="" gmane="" .science.biology.informatics.conductor=""> >> > > -- > James W. MacDonald, M.S. > Biostatistician > University of Washington > Environmental and Occupational Health Sciences > 4225 Roosevelt Way NE, # 100 > Seattle WA 98105-6099 > > [[alternative HTML version deleted]]
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