dear all? any one know how to use R function to get all the plant taxonomy names from NCBI taxonomy databases thank you in advancecs -- shan gao Room 231(Dr.Fei lab) Boyce Thompson Institute Cornell University Tower Road, Ithaca, NY 14853-1801 Office phone: 1-607-254-1267(day) Official email:sg839 at cornell.edu Facebook:http://www.facebook.com/profile.php?id=100001986532253

Dear List Members When I utilized plotSmear function to plot all the logFCs and highlight the DE genes, I got a figure with two tails shown in the attachment. The "tails" are composed of a lot of orange points (tags) and some red tags. I am considering that it might be caused by the loose filtering criteria. The one I set is as follows: d <- d[rowSums(d$counts) >= 31,] In total, I have 31 samples. I want to remove the tails from the output figures. Any comments are very appreciated. Thanks in advance! Best regards Li