Hi, I have data from Human660W_quad beadchips generated by Illumina iScan and am trying to run the processSwathData function to deconvolute the bead-level data. I am not sure what to put for the values for the segmentHeight and segmentWidth. I tried looking for these two values in the .sdf file but there are a few different values of height and width listed in the .sdf file. I wasn't sure which values to use, so I tried two sets of values for segmentHeight and segmentWidth and both sets of values worked, which made me uncertain as to which set of values I should use. I have included the .sdf file below. I am interested in figuring out which values listed in the .sdf file I should use for the segmentHeight and segmentWidth in the processSwathData function. processSwathData(inputDir = "/Users/Desktop/", outputDir="/Users/Desktop/", segmentHeight=460,segmentWidth=460,verbose=TRUE) processSwathData(inputDir = "/Users/Desktop/", outputDir="/Users/Desktop/", segmentHeight=1950,segmentWidth=7300,verbose=TRUE) Thanks in advance for any suggestions, Anna <sentrixdescriptor xmlns:xsi="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema-"="" rel="nofollow">http://www.w3.org/2001/XMLSchema- instance" xmlns:xsd="http://www.w3.org/2001/XMLSchema"> <physicalproperties> <physicalwidth>25000</physicalwidth> <physicalheight>82500</physicalheight> <sectionwidth>7034</sectionwidth> <sectionheight>1771</sectionheight> <samplewidth>8009</samplewidth> <sampleheight>27837</sampleheight> <decodemarkeroffset> <x>4017</x> <y>-135</y> </decodemarkeroffset> <samplepositions> <relativexyzpoint> <x>7833</x> 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Hi Anna, My apologies, I thought I'd got round to automating this step, as I agree that the values are not obvious at all. The sdf values that are supposed to correspond to those two arguments are : <sizegridx>1901</sizegridx> <sizegridy>553</sizegridy> with segmentHeight = SizeGridX and segmentWidth = SizeGridY. Why I hadn't put that in the manual I have no idea, but it's in there now. I haven't ever seen data from the Human660W_quad chip, but assuming it is scanned in the same way (two side-by-side images with a small overlap), then I think those values should work. Let me know if it looks like it hasn't. Mike Smith On 1 May 2012 08:48, <bzguan@ucdavis.edu> wrote: > > Hi, > > I have data from Human660W_quad beadchips generated by Illumina iScan and > am trying to run the > processSwathData function to deconvolute the bead-level data. I am not > sure what to put for the > values for the segmentHeight and segmentWidth. I tried looking for these > two values in the .sdf file > but there are a few different values of height and width listed in the > .sdf file. I wasn't sure which > values to use, so I tried two sets of values for segmentHeight and > segmentWidth and both sets of > values worked, which made me uncertain as to which set of values I should > use. I have included the > .sdf file below. I am interested in figuring out which values listed in > the .sdf file I should use for > the segmentHeight and segmentWidth in the processSwathData function. > > processSwathData(inputDir = "/Users/Desktop/", outputDir="/Users/Desktop/", > segmentHeight=460,segmentWidth=460,verbose=TRUE) > > processSwathData(inputDir = "/Users/Desktop/", outputDir="/Users/Desktop/", > segmentHeight=1950,segmentWidth=7300,verbose=TRUE) > > Thanks in advance for any suggestions, > Anna > > > > > > <sentrixdescriptor xmlns:xsi="&lt;a href=" http:="" www.w3.org="" 2001="" XMLSchema-"="" rel="nofollow">http://www.w3.org/2001/XMLSchema- instance"> xmlns:xsd="http://www.w3.org/2001/XMLSchema"> > <physicalproperties> > <physicalwidth>25000</physicalwidth> > <physicalheight>82500</physicalheight> > <sectionwidth>7034</sectionwidth> > <sectionheight>1771</sectionheight> > <samplewidth>8009</samplewidth> > <sampleheight>27837</sampleheight> > <decodemarkeroffset> > <x>4017</x> > <y>-135</y> > </decodemarkeroffset> > <samplepositions> > <relativexyzpoint> > <x>7833</x> > <y>19157</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>7833</x> > <y>47510</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>17167</x> > <y>19157</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>17167</x> > <y>47510</y> > <z>0</z> > </relativexyzpoint> > </samplepositions> > <sectionpositions> > <relativexyzpoint> > <x>0</x> > <y>-12152</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>-10351</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>-8550</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>-6749</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>-2701</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>-900</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>901</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>2702</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>6750</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>8551</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>10352</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>0</x> > <y>12153</y> > <z>0</z> > </relativexyzpoint> > </sectionpositions> > <decodesectionpositions> > <relativexyzpoint> > <x>0</x> > <y>0</y> > <z>0</z> > </relativexyzpoint> > </decodesectionpositions> > <decodemarkerlocations> > <relativexyzpoint> > <x>3816</x> > <y>6885</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>11850</x> > <y>6885</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>3816</x> > <y>16336</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>11850</x> > <y>16336</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>3816</x> > <y>25787</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>11850</x> > <y>25787</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>3816</x> > <y>35238</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>11850</x> > <y>35238</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>3816</x> > <y>44689</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>11850</x> > <y>44689</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>3816</x> > <y>54140</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>11850</x> > <y>54140</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>13150</x> > <y>6885</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>21184</x> > <y>6885</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>13150</x> > <y>16336</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>21184</x> > <y>16336</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>13150</x> > <y>25787</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>21184</x> > <y>25787</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>13150</x> > <y>35238</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>21184</x> > <y>35238</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>13150</x> > <y>44689</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>21184</x> > <y>44689</y> > <z>0</z> > </relativexyzpoint> > > <relativexyzpoint> > <x>13150</x> > <y>54140</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>21184</x> > <y>54140</y> > <z>0</z> > </relativexyzpoint> > </decodemarkerlocations> > <analyticalmarkerlocations> > <relativexyzpoint> > <x>1328</x> > <y>9706</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>23672</x> > <y>9706</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>1328</x> > <y>19157</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>23672</x> > <y>19157</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>1328</x> > <y>28608</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>23672</x> > <y>28608</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>1328</x> > <y>38059</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>23672</x> > <y>38059</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>1328</x> > <y>47510</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>23672</x> > <y>47510</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>1328</x> > <y>56961</y> > <z>0</z> > </relativexyzpoint> > <relativexyzpoint> > <x>23672</x> > <y>56961</y> > <z>0</z> > </relativexyzpoint> > </analyticalmarkerlocations> > </physicalproperties> > <uiproperties> > <sectionscale>0.06362036</sectionscale> > <samplescale>0.337418169</samplescale> > <sectioncolor> > <r>255</r> > 255 > 224 > </sectioncolor> > <samplecolor> > <r>110</r> > <g>120</g> > 140 > </samplecolor> > <substratecolor> > <r>29</r> > <g>46</g> > 63 > </substratecolor> > <labelpos> > <x>0</x> > <y>0.45</y> > </labelpos> > <samplehighlightcolor> > <r>255</r> > <g>0</g> > 0 > </samplehighlightcolor> > <sectionhighlightcolor> > <r>255</r> > <g>0</g> > 0 > </sectionhighlightcolor> > <labelcolor> > <r>29</r> > <g>46</g> > 63 > </labelcolor> > <labelfontcolor> > <r>245</r> > <g>245</g> > 245 > </labelfontcolor> > <samplelocations> > <normalizedpoint> > <x>-0.0565697</x> > <y>-0.267793924</y> > </normalizedpoint> > <normalizedpoint> > <x>-0.0565697</x> > <y>0.0758788</y> > </normalizedpoint> > <normalizedpoint> > <x>0.0565697</x> > <y>-0.267793924</y> > </normalizedpoint> > <normalizedpoint> > <x>0.0565697</x> > <y>0.0758788</y> > </normalizedpoint> > </samplelocations> > <sectionlocations> > <normalizedpoint> > <x>0</x> > <y>-0.436541284</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>-0.371843222</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>-0.307145160</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>-0.242447097</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>-0.097029132</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>-0.032331069</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>0.0323669929</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>0.0970650552</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>0.2424830209</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>0.3071810832</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>0.3718791455</y> > </normalizedpoint> > <normalizedpoint> > <x>0</x> > <y>0.4365772078</y> > </normalizedpoint> > </sectionlocations> > <decodesectionlocations> > <normalizedpoint> > <x>0</x> > <y>0</y> > </normalizedpoint> > </decodesectionlocations> > <decodemarkers> > <markertype> > <location> > <x>-0.105260611</x> > <y>-0.416545451</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.007878789</x> > <y>-0.416545451</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>-0.105260611</x> > <y>-0.3019879</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.007878789</x> > <y>-0.3019879</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>-0.105260611</x> > <y>-0.187430292</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.007878789</x> > <y>-0.187430292</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>-0.105260611</x> > <y>-0.07287271</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.007878789</x> > <y>-0.07287271</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>-0.105260611</x> > <y>0.0416848622</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.007878789</x> > <y>0.0416848622</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>-0.105260611</x> > <y>0.156242445</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.007878789</x> > <y>0.156242445</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>0.007878787</x> > <y>-0.416545451</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.105260611</x> > <y>-0.416545451</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>0.007878787</x> > <y>-0.3019879</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.105260611</x> > <y>-0.3019879</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>0.007878787</x> > <y>-0.187430292</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.105260611</x> > <y>-0.187430292</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>0.007878787</x> > <y>-0.07287271</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.105260611</x> > <y>-0.07287271</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>0.007878787</x> > <y>0.0416848622</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.105260611</x> > <y>0.0416848622</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > > <markertype> > <location> > <x>0.007878787</x> > <y>0.156242445</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.105260611</x> > <y>0.156242445</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > </decodemarkers> > <analyticalmarkers> > <markertype> > <location> > <x>-0.135418192</x> > <y>-0.382351518</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.135418192</x> > <y>-0.382351518</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.135418192</x> > <y>-0.267793924</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.135418192</x> > <y>-0.267793924</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.135418192</x> > <y>-0.153236359</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.135418192</x> > <y>-0.153236359</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.135418192</x> > <y>-0.0386787765</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.135418192</x> > <y>-0.0386787765</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.135418192</x> > <y>0.0758788</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.135418192</x> > <y>0.0758788</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>-0.135418192</x> > <y>0.190436378</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > <markertype> > <location> > <x>0.135418192</x> > <y>0.190436378</y> > </location> > <type>Slide</type> > <sampleindex>0</sampleindex> > </markertype> > </analyticalmarkers> > <substrateborder> > <normalizedpoint> > <x>-0.151515156</x> > <y>-0.5</y> > </normalizedpoint> > <normalizedpoint> > <x>0.151515156</x> > <y>-0.5</y> > </normalizedpoint> > <normalizedpoint> > <x>0.151515156</x> > <y>0.5</y> > </normalizedpoint> > <normalizedpoint> > <x>-0.151515156</x> > <y>0.5</y> > </normalizedpoint> > </substrateborder> > <sampleborder> > <normalizedpoint> > <x>-0.1438553</x> > <y>-0.50000006</y> > </normalizedpoint> > <normalizedpoint> > <x>0.1438553</x> > <y>-0.50000006</y> > </normalizedpoint> > <normalizedpoint> > <x>0.1438553</x> > <y>0.50000006</y> > </normalizedpoint> > <normalizedpoint> > <x>-0.1438553</x> > <y>0.50000006</y> > </normalizedpoint> > </sampleborder> > <sectionborder> > <normalizedpoint> > <x>-1.98588371</x> > <y>-0.5</y> > </normalizedpoint> > <normalizedpoint> > <x>1.98588371</x> > <y>-0.5</y> > </normalizedpoint> > <normalizedpoint> > <x>1.98588371</x> > <y>0.5</y> > </normalizedpoint> > <normalizedpoint> > <x>-1.98588371</x> > <y>0.5</y> > </normalizedpoint> > </sectionborder> > <matrixtags/> > </uiproperties> > <decodemapping> > <invertimagexaxis>false</invertimagexaxis> > <autocenteralignmentalgorithm>OdysseyII</autocenteralignmentalgorithm> > <markerwidth>460</markerwidth> > <markerheight>460</markerheight> > <mappinggroupforsample> > <int>0</int> > <int>0</int> > <int>0</int> > <int>0</int> > </mappinggroupforsample> > <mappinggroupbysection> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > <string>0</string> > </mappinggroupbysection> > <mapgroups> > <sparsemapgroup> > <sets> > <sparsemapset> > <indices> > <int>0</int> > </indices> > </sparsemapset> > <sparsemapset> > <indices> > <int>13</int> > </indices> > </sparsemapset> > <sparsemapset> > <indices> > <int>10</int> > </indices> > </sparsemapset> > <sparsemapset> > <indices> > <int>23</int> > </indices> > </sparsemapset> > </sets> > </sparsemapgroup> > </mapgroups> > <sampleimagingorder> > <int>0</int> > <int>1</int> > <int>2</int> > <int>3</int> > </sampleimagingorder> > <sectionimagingorder> > <int>0</int> > <int>1</int> > <int>2</int> > <int>3</int> > <int>4</int> > <int>5</int> > <int>6</int> > <int>7</int> > <int>8</int> > <int>9</int> > <int>10</int> > <int>11</int> > </sectionimagingorder> > </decodemapping> > <analyticalmapping> > <invertimagexaxis>true</invertimagexaxis> > <autocenteralignmentalgorithm>OdysseyII</autocenteralignmentalgorithm> > <markerwidth>85</markerwidth> > <markerheight>90</markerheight> > <mappinggroupforsample> > <int>0</int> > <int>0</int> > <int>0</int> > <int>0</int> > </mappinggroupforsample> > <mapgroups> > <sparsemapgroup> > <sets> > <sparsemapset> > <indices> > <int>0</int> > <int>2</int> > </indices> > </sparsemapset> > <sparsemapset> > <indices> > <int>1</int> > <int>3</int> > </indices> > </sparsemapset> > <sparsemapset> > <indices> > <int>11</int> > <int>9</int> > </indices> > </sparsemapset> > </sets> > </sparsemapgroup> > </mapgroups> > <sampleimagingorder> > <int>0</int> > <int>1</int> > <int>2</int> > <int>3</int> > </sampleimagingorder> > <sectionimagingorder> > <int>0</int> > <int>1</int> > <int>2</int> > <int>3</int> > <int>4</int> > <int>5</int> > <int>6</int> > <int>7</int> > <int>8</int> > <int>9</int> > <int>10</int> > <int>11</int> > </sectionimagingorder> > </analyticalmapping> > <analyticaltiltmapping> > <invertimagexaxis>false</invertimagexaxis> > <markerwidth>0</markerwidth> > <markerheight>0</markerheight> > </analyticaltiltmapping> > <decodeimagingproperties> > <resolution>0</resolution> > <fieldofview> > <width>0</width> > <height>0</height> > </fieldofview> > </decodeimagingproperties> > <manufacturingproperties> > <flowcell>ILD</flowcell> > <partnumber>11286817</partnumber> > <rev>A</rev> > <description>207829_207837_4X3Q</description> > <platform>ILD</platform> > <type>Slide</type> > </manufacturingproperties> > <analyticalimagingproperties> > <resolution>1</resolution> > <fieldofview> > <width>7300</width> > <height>1950</height> > </fieldofview> > </analyticalimagingproperties> > <sectionspersupersection>4</sectionspersupersection> > <autofocusoneachsection>true</autofocusoneachsection> > <registrationparameters> > <numcores>1051253</numcores> > <numsubgridsymmetryaxes>3</numsubgridsymmetryaxes> > <numgridsymmetryaxes>2</numgridsymmetryaxes> > <numblocksymmetryaxes>2</numblocksymmetryaxes> > <numverticalstripes>1</numverticalstripes> > <sizesubgridx>1</sizesubgridx> > <sizesubgridy>1</sizesubgridy> > <sizegridx>1901</sizegridx> > <sizegridy>553</sizegridy> > <spacinggridx>-1</spacinggridx> > <spacinggridy>-1</spacinggridy> > <angle>-1000</angle> > <sizeblockx>1</sizeblockx> > <sizeblocky>1</sizeblocky> > <spacingblockx>-1</spacingblockx> > <spacingblocky>-1</spacingblocky> > <numgapsx>0</numgapsx> > <numgapsy>0</numgapsy> > <sizegapx>3</sizegapx> > <sizegapy>3</sizegapy> > <version>2</version> > <invertjaggededge>false</invertjaggededge> > </registrationparameters> > <sectionlabels> > <string>1</string> > <string>2</string> > <string>3</string> > <string>4</string> > <string>5</string> > <string>6</string> > <string>7</string> > <string>8</string> > <string>9</string> > <string>10</string> > <string>11</string> > <string>12</string> > </sectionlabels> > <samplelabels> > <string>R01C01</string> > <string>R02C01</string> > <string>R01C02</string> > <string>R02C02</string> > </samplelabels> > <name>BeadChip 4x3Q</name> > <comment/> > <class>Slide</class> > <assaytype>Infinium HD</assaytype> > > <registrationalgorithmname>StandardGeneric</registrationalgorithmname> > <extractionalgorithmname>StandardWithBackground</extractionalgorith> > </sentrixdescriptor> > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Mike Smith PhD Student Computational Biology Group Cambridge University [[alternative HTML version deleted]]