Entering edit mode
For updating bioconductor,
we recommend
biocLite(character(), ask=FALSE)
However, when I (have several versions of R and bioconductor and)
keep my bioconductor packages in a specific library not first in
my .libPaths(),
I want to specify ' lib.loc = <my-bioc-library> '
but that works {via "..."} only for else { ... } clause in
biocLite(),
not for the first one :
> biocLite
function (pkgs = c("Biobase", "IRanges", "AnnotationDbi"),
suppressUpdates = FALSE,
suppressAutoUpdate = FALSE, ask = TRUE, ...)
{
svnRev <- as.integer(R.Version()$`svn rev`)
if (svnRev < 55733)
.stop("R-2.14 r55733 or newer required.")
if (!suppressAutoUpdate && !bioconductorPackageIsCurrent()) {
on.exit(updateBioconductorPackage(pkgs, ask = ask,
suppressUpdates = suppressUpdates,
...))
}
else {
biocLiteInstall(pkgs, ask = ask, suppressUpdates =
suppressUpdates,
...)
}
}
<environment: namespace:biocinstaller="">
> maintainer("BiocInstaller")
[1] "Biocore Team c/o BioC user list\n<bioconductor at="" stat.math.ethz.ch="">"
>
--------
Thank you for fixing/workaround/..
Martin
