Entering edit mode
Dear Ron,
I noticed that you specified totalTest=100 which is too small for your
dataset. It should be larger than the largest peak number in your
datasets.
Here is a list of old posts on makeVennDiagram that should help you to
choose an appropriate number for totalTest.
https://stat.ethz.ch/pipermail/bioconductor/2010-June/033941.html
https://stat.ethz.ch/pipermail/bioconductor/2010-November/036540.html
http://comments.gmane.org/gmane.science.biology.informatics.conductor
/32345
https://stat.ethz.ch/pipermail/bioconductor/attachments/20100905/bb68
9e19/attachment.pl
http://permalink.gmane.org/gmane.science.biology.informatics.conducto
r/29476
http://permalink.gmane.org/gmane.science.biology.informatics.conduct
or/30115
http://permalink.gmane.org/gmane.science.biology.informatics.conducto
r/35629
http://comments.gmane.org/gmane.science.biology.informatics.conductor
/34765
Best regards,
Julie
On 3/12/12 3:33 PM, "Ron Hart" <rhart@rci.rutgers.edu> wrote:
Hi Julie,
Once again, thank you for writing such a useful R package! Im
working on analyzing some data for another manuscript and Im having
trouble generating a p-value from makeVennDiagram. Enclosed is a text
file with sample output.
Can you help me figure out why I get NaN for the p.value? If it helps
there are something like 50,000 peaks per sample.
Thanks very much,
Ron
[[alternative HTML version deleted]]