Dear all, Newbie: I have done a 384 well plate qPCR and I want to draw a cluster for genes (384 genes). How may "make" R to "widen" graphic window for clusters?

> Dear all, > > Newbie: > > I have done a 384 well plate qPCR and I want to draw a cluster for > genes (384 genes). How may "make" R to "widen" graphic window for > clusters? > Depends on what graphic system you're using. With e.g. quartz on a mac you can say: quartz(width=12) clusterCt(qPCRraw, type="genes", cex=0.5) I assume there's something similar for X11. Basically, most devices will let you set width and height, same as you would do when using pdf() to write to a file. What you might want to do, is using the output from clusterCt() to get a list of the content of the different subclusters. > c.list <- clusterCt(qPCRraw, type="genes", n.cluster=7) > sapply(c.list, length) [1] 68 72 77 12 44 44 65 > c.list[[1]] Gene4 Gene6 Gene11 Gene16 Gene4 Gene11 Gene13 Gene16 4 6 12 17 28 36 38 41 Gene28 Gene30 Gene32 Gene33 Gene35 Gene38 Gene44 Gene28 53 55 57 58 60 63 69 77 Gene30 Gene32 Gene33 Gene35 Gene38 Gene44 Gene51 Gene63 79 81 82 84 87 93 100 112 Gene51 Gene63 Gene85 Gene90 Gene85 Gene95 Gene96 Gene99 124 136 158 163 181 190 191 194 Gene102 Gene96 Gene99 Gene102 Gene110 Gene122 Gene125 Gene126 197 215 218 221 229 241 244 245 Gene136 Gene143 Gene122 Gene125 Gene126 Gene136 Gene139 Gene143 255 262 265 268 269 279 282 286 Gene153 Gene154 Gene155 Gene157 Gene159 Gene161 Gene167 Gene153 296 297 298 300 302 304 310 320 Gene154 Gene155 Gene157 Gene159 Gene161 Gene167 Gene171 Gene181 321 322 324 326 328 334 338 348 Gene191 Gene171 Gene181 Gene191 358 362 372 382 HTH \Heidi > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor >