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Javerjung Sandhu
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200
@javerjung-sandhu-5043
Last seen 10.3 years ago
Dear list,
For GAGE package, I converted Affymetrix hg u133 plus 2 probeset IDs
to gene names so that both "exprs" and "gsets" use same gene ID
system. But when i got the results from Biomart, the data showed
different probe IDs corresponding to same gene name. So if i have to
replace the probe IDs in "exprs" to gene names i will have to enter
same gene name for different probe IDs which is unusual as before
"exprs" had unique probe set IDs.
How does GAGE encounter this problem? Doesn't this affect the result
of the analysis?
Thanks,
Jung
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