Dear list, I am doing HG-U133_Plus_2 data analysis. In my data analysis, I want to get the probe list which include SNP(the snp is defined in 1000Genome). So first, I want to the probe genome position in U133_Plus_2 array. I have checked in this page (http://www.affymetrix.com/support/technical/byproduct.affx?product=hg -u133-plus). But it seems I can not find a suitable file. Any suggestions would be greatly appreciated :)

Hi Fabrice, On 2/12/2012 11:41 PM, Fabrice Tourre wrote: > Dear list, > > I am doing HG-U133_Plus_2 data analysis. > In my data analysis, I want to get the probe list which include > SNP(the snp is defined in 1000Genome). So first, I want to the probe > genome position in U133_Plus_2 array. I have checked in this page > (http://www.affymetrix.com/support/technical/byproduct.affx?product= hg-u133-plus). > But it seems I can not find a suitable file. You could use the BSgenome package for this. See http://bioconductor.org/packages/release/bioc/vignettes/BSgenome/inst/ doc/GenomeSearching.pdf in particular the last section. Best, Jim > > Any suggestions would be greatly appreciated :) > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099