create GeneSetCollection from OBOCollection
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Wendy Qiao ▴ 360
@wendy-qiao-4501
Last seen 10.1 years ago
Hi all, I want to use GOStats for gene set enrichment with the GOslim collection. I find on the GO website that the generic GO slim collection is in the OBO format. I am trying to convert the OBOCollection to a gene set collection so I can use the GSEAGOHyperGparams function for GSEA. After hours trial and error, I still don't figure out how to convert create the genesetcollection from obocollection. Could anybody please help? Any advice is appreciated. Thank you! Wendy [[alternative HTML version deleted]]
GO convert GOstats GO convert GOstats • 780 views
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