Dear Alll, I'm reading edgeR manual and i would appreciate if anyone can tell me what is the default normalization method of CalcNormFactors function. Best Regards, Chris [[alternative HTML version deleted]]

Hi Chris, The default method is TMM. Mark On 13.01.2012, at 11:34, chris Jhon wrote: > Dear Alll, > > I'm reading edgeR manual and i would appreciate if anyone can tell me what > is the default normalization method of CalcNormFactors function. > > > Best Regards, > Chris > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor ---------- Prof. Dr. Mark Robinson Bioinformatics Institute of Molecular Life Sciences University of Zurich Winterthurerstrasse 190 8057 Zurich Switzerland v: +41 44 635 4848 f: +41 44 635 6898 e: mark.robinson at imls.uzh.ch o: Y32-J-34 w: http://tiny.cc/mrobin