Mike Smith <grimbough at="" ...=""> writes: > > Dear Stephen, > > Thank you very much for posting your data, that's a big help. It would be > really great if you could include the images too, as I try to use the > images as a verification step in breaking the text file down into the > component parts. I won't need an entire chip, but the three swaths from > one array section would be great. I'm afraid I won't get a chance to look > at this until the new year as I'm on holiday from tomorrow, but I shall let > you know when I've made processSwathData() more generalisable over the > number of swaths. > > Many thanks > > Mike Smith > I too took the holidays off, so I'm just now sending the tiffs. The new file is ftp://ftp2.cancerresearchuk.org/pub/beadarray/5719680020tifRetry.tar.b z2. The checksum is e3282f320d08376b2f3d07d21b03e67e 5719680020tifRetry.tar.bz2 You can ignore 5719680020tif.tar.bz2 as the transfer failed in the middle. This contains all the tiff files. If there are any problems with the file, I will send one that only contains a single section. Thanks to you, Steve

Hi Stephen, Thanks for supplying the image. I've made some changes to beadarray and the latest devel version (2.5.7) now has a processSwathData() function that can should deal with Illumina data with 3 swaths. Let me know if you encounter any problems, without access to the scanner ourselves there always seems to be a new situation that I haven't accounted for. Mike On Wed, Jan 4, 2012 at 1:21 PM, Stephen Edwards <swandle06@yahoo.com> wrote: > Mike Smith <grimbough@...> writes: > > > > > Dear Stephen, > > > > Thank you very much for posting your data, that's a big help. It would > be > > really great if you could include the images too, as I try to use the > > images as a verification step in breaking the text file down into the > > component parts. I won't need an entire chip, but the three swaths from > > one array section would be great. I'm afraid I won't get a chance to > look > > at this until the new year as I'm on holiday from tomorrow, but I shall > let > > you know when I've made processSwathData() more generalisable over the > > number of swaths. > > > > Many thanks > > > > Mike Smith > > > I too took the holidays off, so I'm just now sending the tiffs. The new > file is > ftp://ftp2.cancerresearchuk.org/pub/beadarray/5719680020tifRetry.tar .bz2. > The checksum is > e3282f320d08376b2f3d07d21b03e67e 5719680020tifRetry.tar.bz2 > > You can ignore 5719680020tif.tar.bz2 as the transfer failed in the middle. > > This contains all the tiff files. If there are any problems with > the file, I will send one that only contains a single section. > > Thanks to you, > Steve > > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Mike Smith PhD Student Computational Biology Group Cambridge University [[alternative HTML version deleted]]