Entering edit mode
Hello Bioconductorians,
I just downloaded and installed the new R-devel (without problems) but
rtracklayer fails to load.
It started by asking me to recompile bitops, which I did.
Unfortunately, the problem persists. Please see below.
Can anybody think of a solution?
Thank you,
Ivan
$ R --vanilla
R Under development (unstable) (2011-11-01 r57541)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(rtracklayer)
Loading required package: RCurl
Loading required package: bitops
Error : classes "file", "connection" are not exported by
'namespace:Biostrings'
Error: package/namespace load failed for ?rtracklayer?
> sessionInfo()
R Under development (unstable) (2011-11-01 r57541)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RCurl_1.6-10 bitops_1.0-4.1
loaded via a namespace (and not attached):
[1] Biostrings_2.23.0 BSgenome_1.23.0 GenomicRanges_1.7.0
[4] IRanges_1.13.0 tools_2.15.0 XML_3.4-3
[7] zlibbioc_1.1.0