Dear All,
I've tried unsuccessfully to install AnnBuilder using R 2.13 and 2.11,
both
32-bit and 64-bit.
> biocLite("AnnBuilder")
Using R version 2.11.1, biocinstall version 2.6.10.
Installing Bioconductor version 2.6 packages:
[1] "AnnBuilder"
Please wait...
Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
argument 'lib' is missing: using 'C:\Users\Carl\Documents/R/win-
library/2.11'
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package ?AnnBuilder? is not available
>
Please, any ideas?
Best,
Carl
More info...Window 7 Home Premium 64-bit.
On Mon, Sep 12, 2011 at 5:44 PM, Carl Baribault <crlbrblt at="" gmail.com=""> wrote:
> Dear All,
>
> I've tried unsuccessfully to install AnnBuilder using R 2.13 and
2.11, both
> 32-bit and 64-bit.
>
>> biocLite("AnnBuilder")
> Using R version 2.11.1, biocinstall version 2.6.10.
> Installing Bioconductor version 2.6 packages:
> [1] "AnnBuilder"
> Please wait...
>
> Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
> ?argument 'lib' is missing: using 'C:\Users\Carl\Documents/R/win-
library/2.11'
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
> ?package ?AnnBuilder? is not available
>>
>
> Please, any ideas?
>
> Best,
> Carl
>
Hi Carl,
AnnBuilder was deprecated away many releases ago and is no longer a
part
of current Bioconductor releases. If you want to make a new
annotation
package, you will want to look at the vignettes in the AnnotationDbi
package. You can see those on our website here:
http://www.bioconductor.org/packages/release/bioc/html/AnnotationDbi.h
tml
Marc
On 09/12/2011 03:48 PM, Carl Baribault wrote:
> More info...Window 7 Home Premium 64-bit.
>
> On Mon, Sep 12, 2011 at 5:44 PM, Carl Baribault<crlbrblt at="" gmail.com=""> wrote:
>> Dear All,
>>
>> I've tried unsuccessfully to install AnnBuilder using R 2.13 and
2.11, both
>> 32-bit and 64-bit.
>>
>>> biocLite("AnnBuilder")
>> Using R version 2.11.1, biocinstall version 2.6.10.
>> Installing Bioconductor version 2.6 packages:
>> [1] "AnnBuilder"
>> Please wait...
>>
>> Warning in install.packages(pkgs = pkgs, repos = repos, ...) :
>> argument 'lib' is missing: using 'C:\Users\Carl\Documents/R/win-
library/2.11'
>> Warning message:
>> In getDependencies(pkgs, dependencies, available, lib) :
>> package ?AnnBuilder? is not available
>> Please, any ideas?
>>
>> Best,
>> Carl
>>
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