Dear list, I am not sure which illumina annotatin package I should use for Illumina Mouse Ref 8 v 1.1 expression beadchip. Is illuminaMousev2.db (GW6 v2) appropriate? At first I thought illuminatMouse GW6 format version 1 (illuminaMousev1.db) would include Mouse Ref-8 v1.1 probe annotation, but the identifiers (GI_xxxx) are different from the probe_ID of Mouse Ref-8 v1.1 (ILMN_xxxx). Thanks, Chao-Jen -- Chao-Jen Wong Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Avenue N., M1-B514 PO Box 19024 Seattle, WA 98109 206.667.4485 cwon2 at fhcrc.org

Hi Chao-Jen, The package illuminaMousev1p1.db should be the one to use. Regards, Mark On Fri, Jul 1, 2011 at 8:35 PM, Wong, Chao-Jen <cwon2 at="" fhcrc.org=""> wrote: > Dear list, > > I am not sure which illumina annotatin package I should use for Illumina Mouse Ref 8 v 1.1 expression beadchip. Is illuminaMousev2.db (GW6 v2) appropriate? At first I thought illuminatMouse GW6 format version 1 (illuminaMousev1.db) would include Mouse Ref-8 v1.1 probe annotation, but the identifiers (GI_xxxx) are different from the probe_ID of Mouse Ref-8 v1.1 (ILMN_xxxx). > > Thanks, > Chao-Jen > > -- > Chao-Jen Wong > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Avenue N., M1-B514 > PO Box 19024 > Seattle, WA 98109 > 206.667.4485 > cwon2 at fhcrc.org > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >