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Skirmantas Kriaucionis
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10
@skirmantas-kriaucionis-4684
Last seen 10.1 years ago
Hello,
It used to work half a year ago, but now I get an error message:
> summary<-aggregate(simple.rle.list, IRanges.list, FUN=sum)
Error in .local(x, ...) : for Ranges 'by', 'length(x) != length(by)'
Basically, I want to sample the Rle vector at specific ranges and get
sum of the values over the indicated ranges.
Thank you for help,
Skirmantas K.
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] rtracklayer_1.12.0 RCurl_1.5-0
[3] bitops_1.0-4.1
BSgenome.Mmusculus.UCSC.mm9_1.3.17
[5] biomaRt_2.8.0 chipseq_1.2.0
[7] ShortRead_1.10.0 Rsamtools_1.4.0
[9] lattice_0.19-26 BSgenome_1.20.0
[11] Biostrings_2.20.0 GenomicRanges_1.4.1
[13] IRanges_1.10.0
loaded via a namespace (and not attached):
[1] Biobase_2.12.1 grid_2.13.0 hwriter_1.3 tools_2.13.0
XML_3.2-0
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