How to get defenitive Amp/del/nochange using DNAcopy package?
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Chiho Kwon ▴ 10
@chiho-kwon-4648
Last seen 10.2 years ago
Hello, My version of R is 2.12.1 Using DNAcopy library, I have created CNAobject then smoothed then segmented. Using the 'subset' and 'plot' functions, I can create plot and can observe the what seems to be amplification and deletion area. My question is, is there a way I can create a table of a DNAcopy object and have a column that says the segment is amplified/deleted/no change? The 'summary' function does not provide this information and I want more definitive result than just looking at the graph and estimating. Thank you in advance. Chiho Kwon Student [[alternative HTML version deleted]]
graph DNAcopy graph DNAcopy • 935 views
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