Hi all, I would like to create the equivalent of org.Hs.eg.db for my organism of interest, Toxoplasma gondii. Could anyone point me toward the right direction. Is it just a query to NCBI with GeneID? This is to use the ChipPeakAnno package for ChIP-chip analysis of a non-mainstream organism. Do you think that is too much trouble, knowing it is not in Biomart? Thanks! Olivier [[alternative HTML version deleted]]

Hi Olivier, This can be done, but it is not trivial because it involves creating an org database (see the sqlite file inside of any of the org packages) from a reliable resource. If this sounds like something that you would be up for, please contact me and I can assist. Marc On 04/24/2011 06:04 PM, Olivier Lucas wrote: > Hi all, > > I would like to create the equivalent of org.Hs.eg.db for my organism of > interest, Toxoplasma gondii. Could anyone point me toward the right direction. > Is it just a query to NCBI with GeneID? > This is to use the ChipPeakAnno package for ChIP-chip analysis of a > non-mainstream organism. Do you think that is too much trouble, knowing it is > not in Biomart? > > Thanks! > > Olivier > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor