Hi Yuan, You can also click the links of the specific packages and explore their vignettes (which are listed/linked on the specific pages for each package). For example, you could look at the vignettes for the GOstats package on it's page here: http://www.bioconductor.org/packages/release/bioc/html/GOstats.html Marc On 04/14/2011 08:15 AM, Steve Lianoglou wrote: > Hi, > > On Thu, Apr 14, 2011 at 11:01 AM, Radhouane Aniba<aradwen at="" gmail.com=""> wrote: >> Hi everyone, >> >> I am looking for a bioconductor packages that take a gene list and output >> the enrichement in term of GO (which processes ? wchich functions ?) and >> eventually kegg pathways with pvalues that describes the enrichement >> >> Any idea ? or help ? > Sure. Go to the bioconductor software page: > > http://www.bioconductor.org/packages/release/bioc/ > > And use your browsers "Find ..." function to search for the > occurrences of "ontology" on that page. > > The "GOstats" package won't turn up using those steps, but that's > because it mentions GO instead of gene ontology -- so, if you want to > be thorough, you can do a second pass with "Find ..." for the word > "GO" > > -steve >