Dear Shreyartha no offense, please, but you might get a better response if you more precisely describe what the goal of the experiment / your scientific question is. Best wishes Wolfgang Shreyartha Mukherjee scripsit 03/04/11 22:16: > Hi , > > I am looking to compare multiple libraries and not pairwise comparisons. > There are GLM functions in edgeR, are there similar functions in deseq as > well? > > Thanks, > Shreyartha > > > On Fri, Apr 1, 2011 at 6:05 PM, Naomi Altman<naomi at="" stat.psu.edu=""> wrote: > >> Do you mean most differentially expressed? This is straight forward with >> either edgeR or DESeq. >> >> Naomi >> >> >> At 04:52 PM 4/1/2011, you wrote: >> >>> Hi, >>> >>> I have RNA-seq count data for 3 genotypes(3 replicates each) for the same >>> conditions. Is there a way to find most variable genes among all three? >>> >>> >>> Thanks, >>> Shreyartha >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >> >> >> > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Wolfgang Huber EMBL http://www.embl.de/research/units/genome_biology/huber