On 03/28/2011 06:24 AM, Guido Leoni wrote: > I've an update about my problem: > running in oneChannelGUI an analysis on a set of 3' arrays and requesting a > gcrma normalization with apt: everything ends fine .... > Need I to reinstall R ? The error suggests a mismatch between the compiled code in a package and the support libraries available on your computer. The most likely cause is that the package was compiled ('installed') against a different set of libraries than are currently available. Likely you copied libraries from one location to another. You can try to correct this problem one package at a time, but this is tedious and error-prone. Of course if this is right before a deadline then you will want to proceed with care, so as not to end up with a system that is completely unusable. It might also be worth while to wait a little; perhaps I have mis-diagnosed the problem and someone else will provide a more accurate solution. Martin > Thanks again > > 2011/3/28 Martin Morgan<mtmorgan at="" fhcrc.org=""> > >> On 03/28/2011 05:36 AM, Guido Leoni wrote: >> >>> Dear List >>> I updated my R version to 2.12 and reinstalled all the oldest packages. >>> Now I'm trying to use oneChannelGUI in order to analyze some gene 1.0 St >>> microarrays. >>> Every time I try to normalize my data with the apt of affymetrix I >>> retrieve >>> the following error >>> >>> apt-probeset-summarize: relocation error: /lib/libnss_files.so.2: symbol >>> __rawmemchr, version GLIBC_2.2.5 not defined in file libc.so.6 with link >>> time reference >>> >>> OnechannelGUI worked fine with R 2.10... >>> Please can someone give to me any suggestion? >>> >> >> It sounds like the update was not done correctly. I would suggest starting >> with a new R installation, and using biocLite() to install the packages that >> you need. >> >> http://bioconductor.org/install/ >> >> Martin >> >> thank you very much >>> Guido Leoni >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: >>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>> >> >> >> -- >> Computational Biology >> Fred Hutchinson Cancer Research Center >> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 >> >> Location: M1-B861 >> Telephone: 206 667-2793 >> > > > -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793