Dynamic Function creation
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drambald ▴ 80
@drambald-4243
Last seen 10.2 years ago
Hello, may be is not the correct place to ask this but: it is possible to create functions in R dynamically? (May be the correct name is anonymous functions ....) I want something like: a <- function(parS,xx) { parS$a^2 + parS$M } b <- function(parS,xx) { parS$b^2 + parS$M } c <- a + b where c is: function(parS,xx) { parS$a^2*exp(-((xx-parS$M)^2)/(2*parS$S^2)) + parS$b^2*exp(-((xx-(parS$M - parS$D))^2)/(2*parS$S^2)) } Regards Davide R.
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drambald ▴ 80
@drambald-4243
Last seen 10.2 years ago
Ehm sorry I made a mistake in my example: a <- function(parS,xx) { parS$a^2 + parS$M } b <- function(parS,xx) { parS$b^2 + parS$M } c <- a + b function(parS,xx) { (parS$a^2 + parS$M) + (parS$b^2 + parS$M ) } Regards On Mar 10, 2011, at 12:23 PM, Davide Rambaldi wrote: > Hello, may be is not the correct place to ask this but: it is possible to create functions in R dynamically? > > (May be the correct name is anonymous functions ....) > > I want something like: > > a <- function(parS,xx) { parS$a^2 + parS$M } > b <- function(parS,xx) { parS$b^2 + parS$M } > > c <- a + b > > where c is: > > function(parS,xx) { parS$a^2*exp(-((xx-parS$M)^2)/(2*parS$S^2)) + parS$b^2*exp(-((xx-(parS$M - parS$D))^2)/(2*parS$S^2)) } > > Regards > > > Davide R. > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor Davide Rambaldi, Bioinformatics PostDoc. ----------------------------------------------------- IFOM-IEO Campus Via Adamello 16, Milano I-20139 Italy [t] +39 02574303870 [e] davide.rambaldi at ifom-ieo-campus.it
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Hi, This question is more appropriate for R-help, so if you want to follow up, send the question there. On Thu, Mar 10, 2011 at 6:36 AM, Davide Rambaldi <davide.rambaldi at="" ifom-ieo-campus.it=""> wrote: > Ehm sorry I made a mistake in my example: > > a <- function(parS,xx) { parS$a^2 + parS$M } > b <- function(parS,xx) { parS$b^2 + parS$M } > > c <- a + b > > function(parS,xx) { ?(parS$a^2 + parS$M) + (parS$b^2 + parS$M ) } I guess it depends on how general you want it to be, but you could do it something like this. I'm redefining your base functions to accept dots `...` (and forget about your param container parS(?)): ## The following is untested f.a <- function(a, M, ...) { a^2 + M } f.b <- function(b, M, ...) { b^2 + M } chain <- function(func.list, ..., .chainWith="+") { chainWith <- getFunction(.chainWith) result <- func.list[[1]](...) if (length(result) > 1) { for (fn in func.list[-1]) { result <- chainWith(result, fn(...)) } } result } And call it like this: R> chain(list(a.f, b.f), a, b, M) You can make `chain` take a list of `.chainWith` functions if you don't want to combine the result of all functions with the same operator. If you're feeling extra adventurous, maybe you can define "+.function", "*.function", etc. that will enable you to combine functions in a more natural looking way that would look more like your origina `c <- a + b` type of thing, but I reckon that could get pretty tricky. -steve > Regards > > On Mar 10, 2011, at 12:23 PM, Davide Rambaldi wrote: > >> Hello, may be is not the correct place to ask this but: it is possible to create functions in R dynamically? >> >> (May be the correct name is anonymous functions ....) >> >> I want something like: >> >> a <- function(parS,xx) { parS$a^2 + parS$M } >> b <- function(parS,xx) { parS$b^2 + parS$M } >> >> c <- a + b >> >> where c is: >> >> function(parS,xx) { ?parS$a^2*exp(-((xx-parS$M)^2)/(2*parS$S^2)) ?+ parS$b^2*exp(-((xx-(parS$M - parS$D))^2)/(2*parS$S^2)) } >> >> Regards >> >> >> Davide R. >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > > Davide Rambaldi, Bioinformatics PostDoc. > ----------------------------------------------------- > IFOM-IEO Campus > Via Adamello 16, Milano > I-20139 Italy > [t] +39 02574303870 > [e] davide.rambaldi at ifom-ieo-campus.it > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor > -- Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact
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Hi Davide, On 03/10/2011 05:57 AM, Steve Lianoglou wrote: > Hi, > > This question is more appropriate for R-help, so if you want to follow > up, send the question there. Also if you follow Steve's suggestion, try to change the subject. I don't think this has to do with "dynamic" function creation or "anonymous" functions. Cheers, H. > > On Thu, Mar 10, 2011 at 6:36 AM, Davide Rambaldi > <davide.rambaldi at="" ifom-ieo-campus.it=""> wrote: >> Ehm sorry I made a mistake in my example: >> >> a<- function(parS,xx) { parS$a^2 + parS$M } >> b<- function(parS,xx) { parS$b^2 + parS$M } >> >> c<- a + b >> >> function(parS,xx) { (parS$a^2 + parS$M) + (parS$b^2 + parS$M ) } > > I guess it depends on how general you want it to be, but you could do > it something like this. I'm redefining your base functions to accept > dots `...` (and forget about your param container parS(?)): > > ## The following is untested > f.a<- function(a, M, ...) { a^2 + M } > f.b<- function(b, M, ...) { b^2 + M } > > chain<- function(func.list, ..., .chainWith="+") { > chainWith<- getFunction(.chainWith) > result<- func.list[[1]](...) > if (length(result)> 1) { > for (fn in func.list[-1]) { > result<- chainWith(result, fn(...)) > } > } > result > } > > And call it like this: > > R> chain(list(a.f, b.f), a, b, M) > > You can make `chain` take a list of `.chainWith` functions if you > don't want to combine the result of all functions with the same > operator. > > If you're feeling extra adventurous, maybe you can define > "+.function", "*.function", etc. that will enable you to combine > functions in a more natural looking way that would look more like your > origina `c<- a + b` type of thing, but I reckon that could get pretty > tricky. > > -steve > > >> Regards >> >> On Mar 10, 2011, at 12:23 PM, Davide Rambaldi wrote: >> >>> Hello, may be is not the correct place to ask this but: it is possible to create functions in R dynamically? >>> >>> (May be the correct name is anonymous functions ....) >>> >>> I want something like: >>> >>> a<- function(parS,xx) { parS$a^2 + parS$M } >>> b<- function(parS,xx) { parS$b^2 + parS$M } >>> >>> c<- a + b >>> >>> where c is: >>> >>> function(parS,xx) { parS$a^2*exp(-((xx-parS$M)^2)/(2*parS$S^2)) + parS$b^2*exp(-((xx-(parS$M - parS$D))^2)/(2*parS$S^2)) } >>> >>> Regards >>> >>> >>> Davide R. >>> >>> _______________________________________________ >>> Bioconductor mailing list >>> Bioconductor at r-project.org >>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> >> Davide Rambaldi, Bioinformatics PostDoc. >> ----------------------------------------------------- >> IFOM-IEO Campus >> Via Adamello 16, Milano >> I-20139 Italy >> [t] +39 02574303870 >> [e] davide.rambaldi at ifom-ieo-campus.it >> >> _______________________________________________ >> Bioconductor mailing list >> Bioconductor at r-project.org >> https://stat.ethz.ch/mailman/listinfo/bioconductor >> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >> > > > -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax: (206) 667-1319
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