Entering edit mode
>Hi list,
>
> At this websites
> http://www.bioconductor.org/help/bioc-
views/release/data/annotation/,
> I cannot find it.
>
> Thanks.
Hi Jinyan,
HuExExonProbesetLocationHg18 <http: www.bioconductor.org="" help="" bioc-="" views="" release="" data="" annotation="" html="" huexexonprobesetlocationhg18.html="">
and
HuExExonProbesetLocationHg19 <http: www.bioconductor.org="" help="" bioc-="" views="" release="" data="" annotation="" html="" huexexonprobesetlocationhg19.html="">
Contain exon-level annotation extracted from Netaffx:
The package contain a data frame with the following columns:
EPROBESETID exon-level probeset id
CHR chromosome
STRAND chromosome strand
START start position of the Probe Selection Region on chromosome
END end position of the Probe Selection Region on chromosome
GPROBESETID Gene-level probeset id
ANNLEVEL annotation level
On the basis of chromosome location it is relatively easy to associate
gene level information using a package as ChIPpeakAnno
Cheers
Raffaele
--
----------------------------------------
Prof. Raffaele A. Calogero
Bioinformatics and Genomics Unit
MBC Centro di Biotecnologie Molecolari
Via Nizza 52, Torino 10126
tel. ++39 0116706457
Fax ++39 0116706487
Mobile ++39 3333827080
email: raffaele.calogero@unito.it
raffaele[dot]calogero[at]gmail[dot]com
www: http://www.bioinformatica.unito.it
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