Installing development packages

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Paulo Nuin ▴ 200

@paulo-nuin-3012

Last seen 9.9 years ago

Canada

Hi I'm looking for the best way to install development packages. I couldn't find any reference on how to do it efficiently. Thanks in advance Paulo

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ADD COMMENT • link updated 13.8 years ago by Dan Tenenbaum ★ 8.2k • written 13.8 years ago by Paulo Nuin ▴ 200

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Dan Tenenbaum ★ 8.2k

@dan-tenenbaum-4256

Last seen 5 months ago

United States

On Mon, Feb 7, 2011 at 1:34 PM, Paulo Nuin <nuin@genedrift.org> wrote: > Hi > > I'm looking for the best way to install development packages. I couldn't > find any reference on how to do it efficiently. > Hi Paulo, The best way is to install and use the development version of R (R 2.13). Then, when you install packages in the normal way, that is: source("http://bioconductor.org/biocLite.R") biocLite("packageName") ...it will automatically install the development version of the package. Dan > > Thanks in advance > > Paulo > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]

ADD COMMENT • link 13.8 years ago Dan Tenenbaum ★ 8.2k

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Sean Davis 21k

@sean-davis-490

Last seen 3 months ago

United States

On Mon, Feb 7, 2011 at 4:34 PM, Paulo Nuin <nuin@genedrift.org> wrote: > Hi > > I'm looking for the best way to install development packages. I couldn't > find any reference on how to do it efficiently. > > Hi, Paulo. 1) Install the development version of R. 2) Follow the normal biocLite() installation process in the development version of R. And the last one is important: 3) Do not mix and match devel and release versions of R or bioconductor packages--stick to the process in (1) and (2) Sean > Thanks in advance > > Paulo > _______________________________________________ > Bioconductor mailing list > Bioconductor@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor > [[alternative HTML version deleted]]

ADD COMMENT • link 13.8 years ago Sean Davis 21k

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Thanks a lot. Trying right now. Cheers Paulo On 2011-02-07, at 4:39 PM, Sean Davis wrote: > > > On Mon, Feb 7, 2011 at 4:34 PM, Paulo Nuin <nuin at="" genedrift.org=""> wrote: > Hi > > I'm looking for the best way to install development packages. I couldn't find any reference on how to do it efficiently. > > > Hi, Paulo. > > 1) Install the development version of R. > 2) Follow the normal biocLite() installation process in the development version of R. > > And the last one is important: > > 3) Do not mix and match devel and release versions of R or bioconductor packages--stick to the process in (1) and (2) > > Sean > > Thanks in advance > > Paulo > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >

ADD REPLY • link 13.8 years ago Paulo Nuin ▴ 200

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