Agilent annotation package for Drosophila
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Clement Chow ▴ 10
@clement-chow-4393
Last seen 10.2 years ago
Hello, Does anyone know where I can download a Drosophila annotation package for the Agilent 4x44 arrays? thanks! Clement
Annotation Annotation • 1.2k views
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Marc Carlson ★ 7.2k
@marc-carlson-2264
Last seen 8.3 years ago
United States
Hi Clement, We don't presently have any Agilent annotation packages for fly, but if you have a mapping of probes to genes from the manufacturer, you can easily generate one using the code in AnnotationDbi. There is a vignette that explains how to do this called SQLForge in the AnnotationDbi package. You can find it here: http://www.bioconductor.org/help/bioc- views/release/bioc/html/AnnotationDbi.html Marc On 12/14/2010 05:30 PM, Clement Chow wrote: > Agilent 4x44 arrays
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Hi Clement, just want to add that you can get all the annotation files for Agilent arrays at the Agilent eArray web site (https://earray.chem.agilent.com/). Regards, Yong Marc Carlson wrote: > Hi Clement, > > We don't presently have any Agilent annotation packages for fly, but if > you have a mapping of probes to genes from the manufacturer, you can > easily generate one using the code in AnnotationDbi. There is a > vignette that explains how to do this called SQLForge in the > AnnotationDbi package. You can find it here: > > http://www.bioconductor.org/help/bioc- views/release/bioc/html/AnnotationDbi.html > > > Marc > > > > > On 12/14/2010 05:30 PM, Clement Chow wrote: >> Agilent 4x44 arrays > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >
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