Hi, All In previous version of package beadarray, I can use the function backgroundNormalise(). But in new one, I cann't find it. Is it included in some other fuction of normalising? Thank you -- Best, Changhe Fu [[alternative HTML version deleted]]

Hi, That function used to be in beadarray to implement the background normalisation that occurs in Illumina's BeadStudio/GenomeStudio. However, it has been shown in various studies to be inferior to other methods. See the neqc (limma) or vst (lumi) alternatives available through the normaliseIllumina function in beadarray. Mark On Fri, Dec 10, 2010 at 11:07 PM, Changhe Fu <fuchanghe at="" gmail.com=""> wrote: > Hi, All > > In previous version of package beadarray, I can use the function > backgroundNormalise(). But in new one, I cann't find it. Is it included in > some other fuction of normalising? > > Thank you > > -- > Best, > Changhe Fu > > ? ? ? ?[[alternative HTML version deleted]] > > _______________________________________________ > Bioconductor mailing list > Bioconductor at r-project.org > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >