My impression is that the author is considering putting it on Bioconductor. Any additional pressure (besides me) might expedite the process; I highly recommend bugging him about it. Kasper On Tue, Nov 23, 2010 at 8:08 AM, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: > On Tue, Nov 23, 2010 at 7:55 AM, S T <elengss at="" gmail.com=""> wrote: > >> Dear Sean, >> >> Thanks very much. >> I downloaded from there and installed it. >> However, the error message states >> >> > utils:::menuInstallLocal() >> package 'sva' successfully unpacked and MD5 sums checked >> > library(sva) >> Error: package 'sva' was built before R 2.10.0: please re-install it >> >> > You could ask the author to build the package for another version of R or > you could install from source. ?In any case, it is probably best to contact > the author directly, as he may have thought of these situations already. > > Sean > > > >> Does this mean that I would have to use it on an older version of R (I'm >> currently using 2.11)? >> >> Thanks again. >> >> E.N.S >> >> On Tue, Nov 23, 2010 at 8:38 PM, Sean Davis <sdavis2 at="" mail.nih.gov=""> wrote: >> >>> >>> >>> On Tue, Nov 23, 2010 at 7:07 AM, S T <elengss at="" gmail.com=""> wrote: >>> >>>> Dear users, >>>> >>>> I am having some trouble installing the SVA package for surrogate >>>> variable >>>> analysis >>>> >>>> > source("http://bioconductor.org/biocLite.R") >>>> BioC_mirror = http://www.bioconductor.org >>>> Change using chooseBioCmirror(). >>>> > biocLite("sva") >>>> Using R version 2.11.1, biocinstall version 2.6.9. >>>> Installing Bioconductor version 2.6 packages: >>>> [1] "sva" >>>> Please wait... >>>> >>>> Warning message: >>>> In getDependencies(pkgs, dependencies, available, lib) : >>>> ?package ?sva? is not available >>>> >>>> Can anyone help? >>>> >>>> >>> I do not think that sva is a bioconductor package and it is not available >>> via CRAN. ?Therefore, biocLite() won't find it. ?The URL appears to be: >>> >>> http://www.biostat.jhsph.edu/~jleek/sva/index.html >>> >>> Sean >>> >>> >>>> Thanks very much. >>>> >>>> E.N.S >>>> >>>> ? ? ? ?[[alternative HTML version deleted]] >>>> >>>> >>>> _______________________________________________ >>>> Bioconductor mailing list >>>> Bioconductor at stat.math.ethz.ch >>>> https://stat.ethz.ch/mailman/listinfo/bioconductor >>>> Search the archives: >>>> http://news.gmane.org/gmane.science.biology.informatics.conductor >>>> >>> >>> >> > > ? ? ? ?[[alternative HTML version deleted]] > > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor >