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Christopher Wilkinson
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@christopher-wilkinson-309
Last seen 10.2 years ago
> Message: 6
> Date: Thu, 29 Jan 2004 09:17:31 -0000
> From: "michael watson (IAH-C)" <michael.watson@bbsrc.ac.uk>
> Subject: RE: [BioC] Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth)
> Biocondu ctor Digest, Vol 11, Issue 38
> To: bioconductor@stat.math.ethz.ch
>
> Just a quick aside:
>
> > so I've been looking at 2D spatial norm
>
> Has anyone published using this method of normalisation?
>
Its not mentioned in the Yang, Dudoit et.al 2002 NAR paper on
normalisation
of cDNA data, but it is mentioned briefly in
Smyth, G. K., and Speed, T. P. (2003). Normalization of cDNA
microarray
data. In: METHODS: Selecting Candidate Genes from DNA Array Screens:
Application to Neuroscience, D. Carter (ed.). Methods Volume 31, Issue
4,
December 2003, pages 265-273.
http://www.statsci.org/smyth/pubs/normalize.pdf
The reference above is as the bottom of the normalisation entry in
limma. I
haven't done an extensive literature search beyond this though.
Cheers
Chris
Dr Chris Wilkinson
Research Officer (Bioinformatics) | Visiting Research Fellow
Child Health Research Institute (CHRI) | Microarray Analysis Group
7th floor, Clarence Rieger Building | Room 121
Women's and Children's Hospital | School of Applied
Mathematics
72 King William Rd, North Adelaide, 5006 | The University of Adelaide,
5005
Math's Office (Room 121) Ph: 8303 3714
CHRI Office (CR2 52A) Ph: 8161 6363
Christopher.Wilkinson@adelaide.edu.au
http://mag.maths.adelaide.edu.au/crwilkinson.html
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