Hi, I'm having trouble installing limma. I have R version 2.10. This is the error message I keep getting: > source("http://bioconductor.org/biocLite.R") Warning messages: 1: In safeSource() : Redefining ?biocinstall? 2: In safeSource() : Redefining ?biocinstallPkgGroups? 3: In safeSource() : Redefining ?biocinstallRepos? > biocLite('limma') Error in v[, i] : incorrect number of dimensions > How can I fix this? Thank you, Anna

On 11/01/2010 03:42 PM, khasanova at berkeley.edu wrote: > Hi, > > I'm having trouble installing limma. I have R version 2.10. This is the > error message I keep getting: > >> source("http://bioconductor.org/biocLite.R") > Warning messages: > 1: In safeSource() : Redefining ?biocinstall? > 2: In safeSource() : Redefining ?biocinstallPkgGroups? > 3: In safeSource() : Redefining ?biocinstallRepos? >> biocLite('limma') > Error in v[, i] : incorrect number of dimensions Hi Anna -- try starting R from the command line with R --vanilla If that fails include the output of sessionInfo() and traceback(), after the error occurs. Martin >> > > How can I fix this? > Thank you, > Anna > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor -- Computational Biology Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: M1-B861 Telephone: 206 667-2793

Hello Anna, I copy pasted the exact commands and installed limma on my ubuntu box. Can you please post the output for sessionInfo() Thanks, S. sessionInfo() -- Platform: i486-pc-linux-gnu (32-bit) locale: [1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C [3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8 [5] LC_MONETARY=C LC_MESSAGES=en_US.utf8 [7] LC_PAPER=en_US.utf8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C attached base packages: [1] stats grDevices utils datasets graphics methods base other attached packages: [1] limma_3.6.6 lattice_0.19-13 loaded via a namespace (and not attached): [1] grid_2.12.0 tools_2.12.0 On Mon, Nov 1, 2010 at 6:42 PM, <khasanova@berkeley.edu> wrote: > Hi, > > I'm having trouble installing limma. I have R version 2.10. This is the > error message I keep getting: > > > source("http://bioconductor.org/biocLite.R") > Warning messages: > 1: In safeSource() : Redefining ‘biocinstall’ > 2: In safeSource() : Redefining ‘biocinstallPkgGroups’ > 3: In safeSource() : Redefining ‘biocinstallRepos’ > > biocLite('limma') > Error in v[, i] : incorrect number of dimensions > > > > How can I fix this? > Thank you, > Anna > > _______________________________________________ > Bioconductor mailing list > Bioconductor@stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > Search the archives: > http://news.gmane.org/gmane.science.biology.informatics.conductor [[alternative HTML version deleted]]